miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 5' -54.7 NC_002512.2 + 111174 0.66 0.977243
Target:  5'- gUCGCCGGCGAGC---GGCa-GGCGGGg -3'
miRNA:   3'- -AGUGGCUGUUUGagaCCGggCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 204879 0.66 0.977243
Target:  5'- -gACCGACGgcgAGCUCUcGGa-CGGCGAGc -3'
miRNA:   3'- agUGGCUGU---UUGAGA-CCggGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 83137 0.66 0.977243
Target:  5'- gUCcCCGucguCGAGgUCgucgGGCCCGGCGGc -3'
miRNA:   3'- -AGuGGCu---GUUUgAGa---CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 111078 0.66 0.976534
Target:  5'- gUCGCCGAcCAcgacgggggcccacAGCUCccGCCCGGCGGc -3'
miRNA:   3'- -AGUGGCU-GU--------------UUGAGacCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 156462 0.66 0.974817
Target:  5'- gCGgCGGgGGACUCgggggcggcgGGCUCGGCGGGc -3'
miRNA:   3'- aGUgGCUgUUUGAGa---------CCGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 4412 0.66 0.974817
Target:  5'- aUCGCgguCGACGgcGGCUgCUGGUagaCCGGCGGGg -3'
miRNA:   3'- -AGUG---GCUGU--UUGA-GACCG---GGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 126217 0.66 0.974817
Target:  5'- cUCugCGACGucgaggcGCUCgUGGCcgCCGAgGAGg -3'
miRNA:   3'- -AGugGCUGUu------UGAG-ACCG--GGCUgCUC- -5'
8976 5' -54.7 NC_002512.2 + 97204 0.66 0.974817
Target:  5'- gUCugCGGC-GGCg--GGCCgGGCGGGa -3'
miRNA:   3'- -AGugGCUGuUUGagaCCGGgCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 35928 0.66 0.974817
Target:  5'- cCGCCGGCGGcCUCUcGcGCCaGACGAc -3'
miRNA:   3'- aGUGGCUGUUuGAGA-C-CGGgCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 95880 0.66 0.972476
Target:  5'- gCGCCGAgGAuCUCgaggucgcccggccgGGUgCCGACGAGg -3'
miRNA:   3'- aGUGGCUgUUuGAGa--------------CCG-GGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 215684 0.66 0.972207
Target:  5'- gUCACCGGCugcccUUCUGGUUCGGgGAc -3'
miRNA:   3'- -AGUGGCUGuuu--GAGACCGGGCUgCUc -5'
8976 5' -54.7 NC_002512.2 + 72874 0.66 0.972207
Target:  5'- gUCGCCGuuguCGcggGGCUCgGGCCCGaaGCGGc -3'
miRNA:   3'- -AGUGGCu---GU---UUGAGaCCGGGC--UGCUc -5'
8976 5' -54.7 NC_002512.2 + 188779 0.66 0.972207
Target:  5'- --uCCGGCGgcGGCUCcGGCCuCGGCGGc -3'
miRNA:   3'- aguGGCUGU--UUGAGaCCGG-GCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 54096 0.66 0.972207
Target:  5'- aCGCCGcCAAGCUgUcGGCCUG-CGAc -3'
miRNA:   3'- aGUGGCuGUUUGAgA-CCGGGCuGCUc -5'
8976 5' -54.7 NC_002512.2 + 6953 0.66 0.972207
Target:  5'- -gGCCGGCcAGgUCguUGGCCCG-CGGGc -3'
miRNA:   3'- agUGGCUGuUUgAG--ACCGGGCuGCUC- -5'
8976 5' -54.7 NC_002512.2 + 24857 0.67 0.969408
Target:  5'- gUCGgCGGCGGACgc-GGcCCCGAcCGAGg -3'
miRNA:   3'- -AGUgGCUGUUUGagaCC-GGGCU-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 213299 0.67 0.969408
Target:  5'- -gGCCGACGAcCUCgucgauuuccUGgccuacgggcuGCCCGACGAGu -3'
miRNA:   3'- agUGGCUGUUuGAG----------AC-----------CGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 70971 0.67 0.969408
Target:  5'- cCGCCGAagccguACUC-GGCCgCGAcCGAGg -3'
miRNA:   3'- aGUGGCUguu---UGAGaCCGG-GCU-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 109220 0.67 0.969408
Target:  5'- cUCACCGAgAuaucgacccGGCUCUGGuguCCCGGgaaGAGg -3'
miRNA:   3'- -AGUGGCUgU---------UUGAGACC---GGGCUg--CUC- -5'
8976 5' -54.7 NC_002512.2 + 139194 0.67 0.969408
Target:  5'- aCGCCGACGccgucgagGAC-CUGGCCCuGGCc-- -3'
miRNA:   3'- aGUGGCUGU--------UUGaGACCGGG-CUGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.