miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 5' -54.7 NC_002512.2 + 229541 0.66 0.981573
Target:  5'- aCGCCGGgGAGCcgggCggGGCgCCGGCGGa -3'
miRNA:   3'- aGUGGCUgUUUGa---Ga-CCG-GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 227100 0.69 0.907867
Target:  5'- cCGCCGGCcGGgUCgGGCUCaGACGGGg -3'
miRNA:   3'- aGUGGCUGuUUgAGaCCGGG-CUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 226729 0.67 0.967635
Target:  5'- cCGCgGGCGAcgacggcgggaccggGCUCcGGCCgGACGAc -3'
miRNA:   3'- aGUGgCUGUU---------------UGAGaCCGGgCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 226490 0.66 0.979493
Target:  5'- aCGCCGugGucCUCUGGggaCCUGugGGc -3'
miRNA:   3'- aGUGGCugUuuGAGACC---GGGCugCUc -5'
8976 5' -54.7 NC_002512.2 + 226281 0.69 0.919344
Target:  5'- -gACCG-CGGGCUCUGcGCCUGucccCGAGa -3'
miRNA:   3'- agUGGCuGUUUGAGAC-CGGGCu---GCUC- -5'
8976 5' -54.7 NC_002512.2 + 223689 0.67 0.969408
Target:  5'- gCGCCGACAAcgGCaucgucCUGGC-CGGCGAc -3'
miRNA:   3'- aGUGGCUGUU--UGa-----GACCGgGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 223160 0.69 0.926838
Target:  5'- cUACCGGCAcgGACaguucgUCUGguacguggacgggccGCCCGACGGGg -3'
miRNA:   3'- aGUGGCUGU--UUG------AGAC---------------CGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 222377 0.69 0.913718
Target:  5'- uUCcCCGGCGGGCUCUGGCUCcucAUGGa -3'
miRNA:   3'- -AGuGGCUGUUUGAGACCGGGc--UGCUc -5'
8976 5' -54.7 NC_002512.2 + 219212 0.66 0.981573
Target:  5'- gCACUGcCGGGC-C-GGCCuCGGCGAGg -3'
miRNA:   3'- aGUGGCuGUUUGaGaCCGG-GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 218970 0.66 0.979493
Target:  5'- gUCGCCGGCuggGAGgUCcGGCCCGGgGu- -3'
miRNA:   3'- -AGUGGCUG---UUUgAGaCCGGGCUgCuc -5'
8976 5' -54.7 NC_002512.2 + 218853 0.74 0.68201
Target:  5'- uUCGCCGACGAGgUCgcccggGGCaCCGACGc- -3'
miRNA:   3'- -AGUGGCUGUUUgAGa-----CCG-GGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 215684 0.66 0.972207
Target:  5'- gUCACCGGCugcccUUCUGGUUCGGgGAc -3'
miRNA:   3'- -AGUGGCUGuuu--GAGACCGGGCUgCUc -5'
8976 5' -54.7 NC_002512.2 + 214332 0.68 0.952377
Target:  5'- -gGCCGAC-GACUCcGGCCUccucaGCGAGa -3'
miRNA:   3'- agUGGCUGuUUGAGaCCGGGc----UGCUC- -5'
8976 5' -54.7 NC_002512.2 + 213299 0.67 0.969408
Target:  5'- -gGCCGACGAcCUCgucgauuuccUGgccuacgggcuGCCCGACGAGu -3'
miRNA:   3'- agUGGCUGUUuGAG----------AC-----------CGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 212383 0.67 0.959816
Target:  5'- aCGCCGACGucgagaUCgaggaGGCggCCGACGAGg -3'
miRNA:   3'- aGUGGCUGUuug---AGa----CCG--GGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 211205 0.68 0.952377
Target:  5'- cCGCCGcccACGAGCUCUuccucUCCGACGAGu -3'
miRNA:   3'- aGUGGC---UGUUUGAGAcc---GGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 204879 0.66 0.977243
Target:  5'- -gACCGACGgcgAGCUCUcGGa-CGGCGAGc -3'
miRNA:   3'- agUGGCUGU---UUGAGA-CCggGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 201849 0.66 0.981573
Target:  5'- -gGCCGGC-AGCUCgccuggGGCCUGcggucCGAGg -3'
miRNA:   3'- agUGGCUGuUUGAGa-----CCGGGCu----GCUC- -5'
8976 5' -54.7 NC_002512.2 + 198106 0.67 0.956204
Target:  5'- gUCGCCGAgUAGGgUUUGGCCCccuUGAGg -3'
miRNA:   3'- -AGUGGCU-GUUUgAGACCGGGcu-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 197647 1.1 0.005292
Target:  5'- aUCACCGACAAACUCUGGCCCGACGAGg -3'
miRNA:   3'- -AGUGGCUGUUUGAGACCGGGCUGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.