miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 213811 0.67 0.714243
Target:  5'- cCCGGGAGGguuCCCUGGACgagaguCUCGAg -3'
miRNA:   3'- aGGCCCUCUagcGGGACCUG------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 213040 0.72 0.430053
Target:  5'- gCCGGcugcgggggaucGAGAUCGCCCUGcccaGCCCCG-Cg -3'
miRNA:   3'- aGGCC------------CUCUAGCGGGACc---UGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 211902 0.71 0.454452
Target:  5'- uUCCGGGGcugccgcgucgucGAgCGUCg-GGACCCCGACg -3'
miRNA:   3'- -AGGCCCU-------------CUaGCGGgaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 211723 0.66 0.759585
Target:  5'- aCgGGGAGcugugccUCGgCCUGG-CCCgCGACg -3'
miRNA:   3'- aGgCCCUCu------AGCgGGACCuGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 208682 0.66 0.76839
Target:  5'- cCCGGGGGccgcUGuCCCUGGACggguaCCCGGg -3'
miRNA:   3'- aGGCCCUCua--GC-GGGACCUG-----GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 205101 0.7 0.535417
Target:  5'- cUCgGGGGGcgCGCCC-GGACCCgaGCg -3'
miRNA:   3'- -AGgCCCUCuaGCGGGaCCUGGGgcUG- -5'
8978 3' -62.2 NC_002512.2 + 204802 0.68 0.667389
Target:  5'- cCCGGGAGGUccgCGUCCcgGGGgCgCGGCg -3'
miRNA:   3'- aGGCCCUCUA---GCGGGa-CCUgGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 202184 0.67 0.714243
Target:  5'- -aCGGGAGAaCGCgCguuccGGAUCgCCGACg -3'
miRNA:   3'- agGCCCUCUaGCGgGa----CCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 200219 0.69 0.55393
Target:  5'- cCCGaGGAGccggaGCCCgaGGAgCCCGACg -3'
miRNA:   3'- aGGC-CCUCuag--CGGGa-CCUgGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 197381 1.09 0.001473
Target:  5'- gUCCGGGAGAUCGCCCUGGACCCCGACu -3'
miRNA:   3'- -AGGCCCUCUAGCGGGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 196436 0.66 0.728961
Target:  5'- gUCGGGAGAggUCGgggccauggaauaCCUGGGCUgCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCg------------GGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 194832 0.66 0.777092
Target:  5'- aCCGuGGuGcuGUCccgGCCCgugcGGACCCCGAUc -3'
miRNA:   3'- aGGC-CCuC--UAG---CGGGa---CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 192967 0.68 0.629417
Target:  5'- cCCGGGuccuccCGCUCUGGuCCuCCGGCg -3'
miRNA:   3'- aGGCCCucua--GCGGGACCuGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 192814 0.69 0.600934
Target:  5'- cCCGGGGcGAUCGCaCCgGGGCCaggugGACg -3'
miRNA:   3'- aGGCCCU-CUAGCG-GGaCCUGGgg---CUG- -5'
8978 3' -62.2 NC_002512.2 + 189502 0.66 0.750681
Target:  5'- aCCGccagguGGAGA-CGCUCcGGGCCCgGGCu -3'
miRNA:   3'- aGGC------CCUCUaGCGGGaCCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 185865 0.69 0.582034
Target:  5'- gUCGaGGAGggCGCCUcGGGCCgCUGGCa -3'
miRNA:   3'- aGGC-CCUCuaGCGGGaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 185420 0.66 0.777092
Target:  5'- cCCGGGg---CGCCCUGGAgguCUUCGAg -3'
miRNA:   3'- aGGCCCucuaGCGGGACCU---GGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 185035 0.69 0.572628
Target:  5'- gUCgGGGAGA--GCCCUaGGAUCCUgGACg -3'
miRNA:   3'- -AGgCCCUCUagCGGGA-CCUGGGG-CUG- -5'
8978 3' -62.2 NC_002512.2 + 184008 0.68 0.66739
Target:  5'- gUCCcGGAGAugauuUCGCCCgGGGgUCCGAa -3'
miRNA:   3'- -AGGcCCUCU-----AGCGGGaCCUgGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 183684 0.69 0.591471
Target:  5'- cCCGaaaGAGcUCuaCCUGGACCUCGACg -3'
miRNA:   3'- aGGCc--CUCuAGcgGGACCUGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.