miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 42970 0.67 0.676838
Target:  5'- -aCGGGcAGGUagaCGCgCUGGuuCCCGACg -3'
miRNA:   3'- agGCCC-UCUA---GCGgGACCugGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 43654 0.7 0.544648
Target:  5'- aCCGGGAccUCGCCCUcGGuggcgGCCgCGGCg -3'
miRNA:   3'- aGGCCCUcuAGCGGGA-CC-----UGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 44838 0.67 0.723462
Target:  5'- cCCGGGucggCGUCCaGGAuccuagggcucuCCCCGACg -3'
miRNA:   3'- aGGCCCucuaGCGGGaCCU------------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 45396 0.69 0.572628
Target:  5'- gCCGGGAcuGUCGCUCgugcGGGCgCUCGACg -3'
miRNA:   3'- aGGCCCUc-UAGCGGGa---CCUG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 47565 0.69 0.598093
Target:  5'- -gCGGGAGGcgagcuucaagaucUCGUCCcGGuCCCUGACg -3'
miRNA:   3'- agGCCCUCU--------------AGCGGGaCCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 48744 0.7 0.49909
Target:  5'- gCCGcGGAGucguUCGUCCUGG-CCCUGGa -3'
miRNA:   3'- aGGC-CCUCu---AGCGGGACCuGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 49735 0.73 0.359525
Target:  5'- cUCGGGAcgGAggcCGUCCUGGACcgCCCGACg -3'
miRNA:   3'- aGGCCCU--CUa--GCGGGACCUG--GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 59160 0.67 0.695633
Target:  5'- aCCGGGccuGGAacccgUGCCUcGuGACCCCGGCc -3'
miRNA:   3'- aGGCCC---UCUa----GCGGGaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 66578 0.67 0.695633
Target:  5'- -aCGaGGAGAcCGCCgCUGGucugguagACCUCGACg -3'
miRNA:   3'- agGC-CCUCUaGCGG-GACC--------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 70514 0.67 0.686254
Target:  5'- -gCGGGAcccgcgaauggGA-CGCCCc-GACCCCGACg -3'
miRNA:   3'- agGCCCU-----------CUaGCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 71413 0.68 0.638924
Target:  5'- cCCGcGGAGAUCGUgCUGaGGCugcgCUCGACg -3'
miRNA:   3'- aGGC-CCUCUAGCGgGAC-CUG----GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 72795 0.74 0.330879
Target:  5'- gCCGGGAcGGgccCGCCgUGGGCgCCGGCg -3'
miRNA:   3'- aGGCCCU-CUa--GCGGgACCUGgGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 74498 0.67 0.704033
Target:  5'- cUCCGc--GAUCGCCCgccGGcgccgccGCCCCGACc -3'
miRNA:   3'- -AGGCccuCUAGCGGGa--CC-------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 74574 0.66 0.768391
Target:  5'- gUUGGcGAGAUCGUCCUcGGCCauggucacggCCGACg -3'
miRNA:   3'- aGGCC-CUCUAGCGGGAcCUGG----------GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 76906 0.69 0.557656
Target:  5'- aCCGGGAGGcgCGUCCacuuuauaagaagaGGACCCCGcucGCg -3'
miRNA:   3'- aGGCCCUCUa-GCGGGa-------------CCUGGGGC---UG- -5'
8978 3' -62.2 NC_002512.2 + 85209 0.67 0.676838
Target:  5'- gCCGGGucGUCGUCCUcgcucgcccGGACCgCGAa -3'
miRNA:   3'- aGGCCCucUAGCGGGA---------CCUGGgGCUg -5'
8978 3' -62.2 NC_002512.2 + 85586 0.66 0.767515
Target:  5'- gCCGGGAGAgcgCGUCCgcguucgGGugCCUccgccgccucuggGACu -3'
miRNA:   3'- aGGCCCUCUa--GCGGGa------CCugGGG-------------CUG- -5'
8978 3' -62.2 NC_002512.2 + 85974 0.66 0.750682
Target:  5'- gUCGGcGAGuUCGCCCUcucGGACgaCGACa -3'
miRNA:   3'- aGGCC-CUCuAGCGGGA---CCUGggGCUG- -5'
8978 3' -62.2 NC_002512.2 + 86089 0.72 0.3977
Target:  5'- aCCGGGAGAacaGCCggcggcucaUGGACCCgGGCg -3'
miRNA:   3'- aGGCCCUCUag-CGGg--------ACCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 86124 0.68 0.610417
Target:  5'- gCgGaGGAGGUCGCggaCCUGGAagCCGACg -3'
miRNA:   3'- aGgC-CCUCUAGCG---GGACCUggGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.