miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 101449 0.66 0.741689
Target:  5'- gCUGGGccauGGcCGCCCgcgaggaGGGCUCCGGCg -3'
miRNA:   3'- aGGCCCu---CUaGCGGGa------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 135218 0.66 0.777092
Target:  5'- gCCGGGGGGcC-CCCcGG-CCCCGGg -3'
miRNA:   3'- aGGCCCUCUaGcGGGaCCuGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 211723 0.66 0.759585
Target:  5'- aCgGGGAGcugugccUCGgCCUGG-CCCgCGACg -3'
miRNA:   3'- aGgCCCUCu------AGCgGGACCuGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 189502 0.66 0.750681
Target:  5'- aCCGccagguGGAGA-CGCUCcGGGCCCgGGCu -3'
miRNA:   3'- aGGC------CCUCUaGCGGGaCCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 98233 0.66 0.732613
Target:  5'- cUCCGGGuGcucUCGUCgC-GGACCCCGuACu -3'
miRNA:   3'- -AGGCCCuCu--AGCGG-GaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 125063 0.66 0.732613
Target:  5'- gCCGGGAcgggacguucGA-CGCCCUGGAguacaaCCCGcCg -3'
miRNA:   3'- aGGCCCU----------CUaGCGGGACCUg-----GGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 164269 0.66 0.741688
Target:  5'- gUCGGGucGAUCGCCUcGGGCUUCGuCu -3'
miRNA:   3'- aGGCCCu-CUAGCGGGaCCUGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 146256 0.66 0.763119
Target:  5'- aCCGGGAccuggugggccgccuGAaCGCCgUGuccaACCCCGGCg -3'
miRNA:   3'- aGGCCCU---------------CUaGCGGgACc---UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 143590 0.66 0.74889
Target:  5'- --aGGGAGG-CGCCCUugcgugcGGGCCCCcgucuccGGCg -3'
miRNA:   3'- aggCCCUCUaGCGGGA-------CCUGGGG-------CUG- -5'
8978 3' -62.2 NC_002512.2 + 127830 0.66 0.76839
Target:  5'- cUCCGGGAGGUCGUCggcGGcguccGCCgCGAa -3'
miRNA:   3'- -AGGCCCUCUAGCGGga-CC-----UGGgGCUg -5'
8978 3' -62.2 NC_002512.2 + 196436 0.66 0.728961
Target:  5'- gUCGGGAGAggUCGgggccauggaauaCCUGGGCUgCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCg------------GGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 99957 0.67 0.676838
Target:  5'- gCCGGuGccuGAUCGgCCUGG-CCCCG-Cg -3'
miRNA:   3'- aGGCC-Cu--CUAGCgGGACCuGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 85209 0.67 0.676838
Target:  5'- gCCGGGucGUCGUCCUcgcucgcccGGACCgCGAa -3'
miRNA:   3'- aGGCCCucUAGCGGGA---------CCUGGgGCUg -5'
8978 3' -62.2 NC_002512.2 + 66578 0.67 0.695633
Target:  5'- -aCGaGGAGAcCGCCgCUGGucugguagACCUCGACg -3'
miRNA:   3'- agGC-CCUCUaGCGG-GACC--------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 135156 0.67 0.695633
Target:  5'- aCCGGGcGGGguUCG-CCUGGAUCCUGGu -3'
miRNA:   3'- aGGCCC-UCU--AGCgGGACCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 11576 0.67 0.704964
Target:  5'- aCgGGGAGcacgagcggcCGCCCagggccggGGACCCCGAg -3'
miRNA:   3'- aGgCCCUCua--------GCGGGa-------CCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 86180 0.67 0.704964
Target:  5'- -gCGGGAGcuggaggucgCGCCCUccGugCCCGACa -3'
miRNA:   3'- agGCCCUCua--------GCGGGAc-CugGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 2491 0.67 0.723462
Target:  5'- gUCCGGGcg---GCCUUGGGgaacggaucucCCCCGACg -3'
miRNA:   3'- -AGGCCCucuagCGGGACCU-----------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 104464 0.67 0.723462
Target:  5'- cUCgCGGGuGGugucgucguUCGCCCUcGGGCCCgGGg -3'
miRNA:   3'- -AG-GCCCuCU---------AGCGGGA-CCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 127568 0.67 0.723462
Target:  5'- gUCCGGGAG---GCCCgacGGACCguccgCGACg -3'
miRNA:   3'- -AGGCCCUCuagCGGGa--CCUGGg----GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.