miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 9942 0.67 0.717939
Target:  5'- cCCGGGGGAUCcaCCCUcccccgcgcgucgacGGAgaCCGACg -3'
miRNA:   3'- aGGCCCUCUAGc-GGGA---------------CCUggGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 2491 0.67 0.723462
Target:  5'- gUCCGGGcg---GCCUUGGGgaacggaucucCCCCGACg -3'
miRNA:   3'- -AGGCCCucuagCGGGACCU-----------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 44838 0.67 0.723462
Target:  5'- cCCGGGucggCGUCCaGGAuccuagggcucuCCCCGACg -3'
miRNA:   3'- aGGCCCucuaGCGGGaCCU------------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 104464 0.67 0.723462
Target:  5'- cUCgCGGGuGGugucgucguUCGCCCUcGGGCCCgGGg -3'
miRNA:   3'- -AG-GCCCuCU---------AGCGGGA-CCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 127568 0.67 0.723462
Target:  5'- gUCCGGGAG---GCCCgacGGACCguccgCGACg -3'
miRNA:   3'- -AGGCCCUCuagCGGGa--CCUGGg----GCUG- -5'
8978 3' -62.2 NC_002512.2 + 70514 0.67 0.686254
Target:  5'- -gCGGGAcccgcgaauggGA-CGCCCc-GACCCCGACg -3'
miRNA:   3'- agGCCCU-----------CUaGCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 85209 0.67 0.676838
Target:  5'- gCCGGGucGUCGUCCUcgcucgcccGGACCgCGAa -3'
miRNA:   3'- aGGCCCucUAGCGGGA---------CCUGGgGCUg -5'
8978 3' -62.2 NC_002512.2 + 132539 0.67 0.722543
Target:  5'- cUCCGcGGGcGGcgccgucggccucUcCGCCCUcGACCCCGGCg -3'
miRNA:   3'- -AGGC-CCU-CU-------------A-GCGGGAcCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 218601 0.67 0.714243
Target:  5'- cCCGGGGucUCGCCCgcGGACUCgaagGACg -3'
miRNA:   3'- aGGCCCUcuAGCGGGa-CCUGGGg---CUG- -5'
8978 3' -62.2 NC_002512.2 + 213811 0.67 0.714243
Target:  5'- cCCGGGAGGguuCCCUGGACgagaguCUCGAg -3'
miRNA:   3'- aGGCCCUCUagcGGGACCUG------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 202184 0.67 0.714243
Target:  5'- -aCGGGAGAaCGCgCguuccGGAUCgCCGACg -3'
miRNA:   3'- agGCCCUCUaGCGgGa----CCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 166404 0.67 0.714243
Target:  5'- cCCGGGGGAUgGUCCUGccGAgccugcccucuuCCCCGcCg -3'
miRNA:   3'- aGGCCCUCUAgCGGGAC--CU------------GGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 121423 0.67 0.714243
Target:  5'- --aGGGAGA-CGCCCgcggagucGGCCCCGGa -3'
miRNA:   3'- aggCCCUCUaGCGGGac------CUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 98968 0.67 0.714243
Target:  5'- aCCGGGccGAcCGCgCUUGaGACCCgGACg -3'
miRNA:   3'- aGGCCCu-CUaGCG-GGAC-CUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 227951 0.67 0.713318
Target:  5'- -gCGGGGGAgCGCgggggagCCggagaggaGGGCCCCGGCg -3'
miRNA:   3'- agGCCCUCUaGCG-------GGa-------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 217522 0.67 0.704964
Target:  5'- cUCGGGGGGUCGCgguucaCCUGGuugaaCCgGGCg -3'
miRNA:   3'- aGGCCCUCUAGCG------GGACCug---GGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 167810 0.67 0.704964
Target:  5'- -gCGGGcccccaacuacgAGGUgGCCgaGGACCCCGcGCa -3'
miRNA:   3'- agGCCC------------UCUAgCGGgaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 99957 0.67 0.676838
Target:  5'- gCCGGuGccuGAUCGgCCUGG-CCCCG-Cg -3'
miRNA:   3'- aGGCC-Cu--CUAGCgGGACCuGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 42970 0.67 0.676838
Target:  5'- -aCGGGcAGGUagaCGCgCUGGuuCCCGACg -3'
miRNA:   3'- agGCCC-UCUA---GCGgGACCugGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 99609 0.67 0.727131
Target:  5'- cCCGGGccccgcgcucgucgcGGucGUCGCCCUcGGAgggCCCGGCg -3'
miRNA:   3'- aGGCCC---------------UC--UAGCGGGA-CCUg--GGGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.