miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 5818 0.66 0.768391
Target:  5'- cUCCGuGGAGAggucgcagaCGCCCgacGAgucguCCCCGGCg -3'
miRNA:   3'- -AGGC-CCUCUa--------GCGGGac-CU-----GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 194832 0.66 0.777092
Target:  5'- aCCGuGGuGcuGUCccgGCCCgugcGGACCCCGAUc -3'
miRNA:   3'- aGGC-CCuC--UAG---CGGGa---CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 95752 0.66 0.758699
Target:  5'- gUCCGGGuuGAUCGUCa-GGAcgaagaaCCUCGGCg -3'
miRNA:   3'- -AGGCCCu-CUAGCGGgaCCU-------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 116950 0.66 0.750682
Target:  5'- gUCCGcGGGcucGcgCGCCaCcGGGCCgCCGACg -3'
miRNA:   3'- -AGGC-CCU---CuaGCGG-GaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 14068 0.66 0.750682
Target:  5'- gCCGGGAGGggaGUCCccGGCCCCGu- -3'
miRNA:   3'- aGGCCCUCUag-CGGGacCUGGGGCug -5'
8978 3' -62.2 NC_002512.2 + 74574 0.66 0.768391
Target:  5'- gUUGGcGAGAUCGUCCUcGGCCauggucacggCCGACg -3'
miRNA:   3'- aGGCC-CUCUAGCGGGAcCUGG----------GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 85586 0.66 0.767515
Target:  5'- gCCGGGAGAgcgCGUCCgcguucgGGugCCUccgccgccucuggGACu -3'
miRNA:   3'- aGGCCCUCUa--GCGGGa------CCugGGG-------------CUG- -5'
8978 3' -62.2 NC_002512.2 + 85974 0.66 0.750682
Target:  5'- gUCGGcGAGuUCGCCCUcucGGACgaCGACa -3'
miRNA:   3'- aGGCC-CUCuAGCGGGA---CCUGggGCUG- -5'
8978 3' -62.2 NC_002512.2 + 215636 0.66 0.777092
Target:  5'- gUCGaGGAGAUCgGUCCUGcGuuCCCGAa -3'
miRNA:   3'- aGGC-CCUCUAG-CGGGAC-CugGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 18731 0.66 0.750682
Target:  5'- cUCGGGcAGcaCGCCCUGGAugacgcccagguCCUCGGCc -3'
miRNA:   3'- aGGCCC-UCuaGCGGGACCU------------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 134607 0.66 0.759585
Target:  5'- cCCGGGuuccccugCGUCCUGGucuacuccguGCCCUGGCc -3'
miRNA:   3'- aGGCCCucua----GCGGGACC----------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 185420 0.66 0.777092
Target:  5'- cCCGGGg---CGCCCUGGAgguCUUCGAg -3'
miRNA:   3'- aGGCCCucuaGCGGGACCU---GGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 99212 0.66 0.750682
Target:  5'- cUCCGcGGccgccgccguguGGGUCGUgcgcaUCUGGuGCCCCGGCg -3'
miRNA:   3'- -AGGC-CC------------UCUAGCG-----GGACC-UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 219839 0.66 0.777092
Target:  5'- gUCGGGGGGUCcgGCCCgggggcGGAUCgCgGACg -3'
miRNA:   3'- aGGCCCUCUAG--CGGGa-----CCUGG-GgCUG- -5'
8978 3' -62.2 NC_002512.2 + 157071 0.66 0.777092
Target:  5'- cCCGGGguccgGGGUCGCC--GGcGCCCaCGGCg -3'
miRNA:   3'- aGGCCC-----UCUAGCGGgaCC-UGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 135218 0.66 0.777092
Target:  5'- gCCGGGGGGcC-CCCcGG-CCCCGGg -3'
miRNA:   3'- aGGCCCUCUaGcGGGaCCuGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 155658 0.66 0.777092
Target:  5'- gUCCGGccGuUCGCCCcgcgucgGGACCgCGGCc -3'
miRNA:   3'- -AGGCCcuCuAGCGGGa------CCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 4457 0.66 0.759585
Target:  5'- -gCGGGGGucggcGUCgGCCCcaacccGACCCCGACc -3'
miRNA:   3'- agGCCCUC-----UAG-CGGGac----CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 101449 0.66 0.741689
Target:  5'- gCUGGGccauGGcCGCCCgcgaggaGGGCUCCGGCg -3'
miRNA:   3'- aGGCCCu---CUaGCGGGa------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 21093 0.66 0.759585
Target:  5'- cUCCGGGGcGAcCGCCgUcucagacgcGGACCuuGGCc -3'
miRNA:   3'- -AGGCCCU-CUaGCGGgA---------CCUGGggCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.