miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 197381 1.09 0.001473
Target:  5'- gUCCGGGAGAUCGCCCUGGACCCCGACu -3'
miRNA:   3'- -AGGCCCUCUAGCGGGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 126387 0.86 0.050827
Target:  5'- cCCGGGAGAgCGCCCgGGGCCCCGGg -3'
miRNA:   3'- aGGCCCUCUaGCGGGaCCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 9837 0.78 0.185092
Target:  5'- cUCGGGcggagccaugucgAGAUCGCCC-GGACCCCGAg -3'
miRNA:   3'- aGGCCC-------------UCUAGCGGGaCCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 164950 0.78 0.189887
Target:  5'- aCCGGGAGuaCGUgCUGGACCCCGuCa -3'
miRNA:   3'- aGGCCCUCuaGCGgGACCUGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 122868 0.76 0.259786
Target:  5'- gUCGGGAGcgCGCCCggcucucggccGACCCCGGCc -3'
miRNA:   3'- aGGCCCUCuaGCGGGac---------CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 3403 0.75 0.278735
Target:  5'- -gCGaGGGGAgCGCCC-GGGCCCCGGCc -3'
miRNA:   3'- agGC-CCUCUaGCGGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 31165 0.75 0.278735
Target:  5'- cCCGGGAGA-CGCaccgCCUGGugACCUCGACg -3'
miRNA:   3'- aGGCCCUCUaGCG----GGACC--UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 142071 0.74 0.317199
Target:  5'- gCCGGGGGAUCGCUCgggGGugCaaCCGAa -3'
miRNA:   3'- aGGCCCUCUAGCGGGa--CCugG--GGCUg -5'
8978 3' -62.2 NC_002512.2 + 72795 0.74 0.330879
Target:  5'- gCCGGGAcGGgccCGCCgUGGGCgCCGGCg -3'
miRNA:   3'- aGGCCCU-CUa--GCGGgACCUGgGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 218856 0.73 0.344988
Target:  5'- gCCGacGAGGUCGCCCgGGGCaCCGACg -3'
miRNA:   3'- aGGCc-CUCUAGCGGGaCCUGgGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 122271 0.73 0.359525
Target:  5'- gCCGcGGGGA-CGUCCUGGAgCCCGuCa -3'
miRNA:   3'- aGGC-CCUCUaGCGGGACCUgGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 49735 0.73 0.359525
Target:  5'- cUCGGGAcgGAggcCGUCCUGGACcgCCCGACg -3'
miRNA:   3'- aGGCCCU--CUa--GCGGGACCUG--GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 106714 0.73 0.359525
Target:  5'- cUCCGGGAuGAccgCGCuCCUGuccgccuccucGGCCCCGGCg -3'
miRNA:   3'- -AGGCCCU-CUa--GCG-GGAC-----------CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 128654 0.73 0.359525
Target:  5'- gCCGGGGGAUCGagcuccUCCUGcugcgggaGACCCUGGCg -3'
miRNA:   3'- aGGCCCUCUAGC------GGGAC--------CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 128175 0.73 0.38212
Target:  5'- cCCGGGgacgAGGUCGCCgagcGGGCCgCCGGCg -3'
miRNA:   3'- aGGCCC----UCUAGCGGga--CCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 215540 0.72 0.389859
Target:  5'- cUCCGGGAGAUCcUgCUGGccgucggcGCCUCGGCg -3'
miRNA:   3'- -AGGCCCUCUAGcGgGACC--------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 158432 0.72 0.389859
Target:  5'- gUUCGGGcAGGUgGCCUacuacgUGGGCUCCGGCg -3'
miRNA:   3'- -AGGCCC-UCUAgCGGG------ACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 86089 0.72 0.3977
Target:  5'- aCCGGGAGAacaGCCggcggcucaUGGACCCgGGCg -3'
miRNA:   3'- aGGCCCUCUag-CGGg--------ACCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 149006 0.72 0.405641
Target:  5'- gCCGGGGGGcCGCCgC-GGACcgCCCGACa -3'
miRNA:   3'- aGGCCCUCUaGCGG-GaCCUG--GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 116358 0.72 0.408846
Target:  5'- aCCGGGAGAcggggagggucaugcUgGCCCUGcGGuCCCCGGg -3'
miRNA:   3'- aGGCCCUCU---------------AgCGGGAC-CU-GGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.