miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 5524 0.7 0.49909
Target:  5'- cCCGGaccGAGGUcuccCGCCC-GcGACCCCGGCg -3'
miRNA:   3'- aGGCC---CUCUA----GCGGGaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 134727 0.72 0.413682
Target:  5'- gCCGGGGGAagGCUCcGGuCCUCGACc -3'
miRNA:   3'- aGGCCCUCUagCGGGaCCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 102869 0.72 0.43838
Target:  5'- aCCGGGGGGaCGCCUacgggGGACCCgGGu -3'
miRNA:   3'- aGGCCCUCUaGCGGGa----CCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 9681 0.71 0.446799
Target:  5'- cCCGGGc---CGCCgUcGGGCCCCGGCg -3'
miRNA:   3'- aGGCCCucuaGCGGgA-CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 109010 0.71 0.463902
Target:  5'- gCCGGcGGcGUCGUCCUgcGGACCCgCGGCg -3'
miRNA:   3'- aGGCC-CUcUAGCGGGA--CCUGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 108701 0.71 0.476074
Target:  5'- cUCCaGGGugucgucgucguccgAGAacgccUCGCCCUGGGCCgCGGCc -3'
miRNA:   3'- -AGG-CCC---------------UCU-----AGCGGGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 102208 0.71 0.48134
Target:  5'- -gCGGGAGAUCGCCgCggccGGAgcggcCCUCGACc -3'
miRNA:   3'- agGCCCUCUAGCGG-Ga---CCU-----GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 48744 0.7 0.49909
Target:  5'- gCCGcGGAGucguUCGUCCUGG-CCCUGGa -3'
miRNA:   3'- aGGC-CCUCu---AGCGGGACCuGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 112138 0.7 0.49909
Target:  5'- aUCGGGaAGAUCuggaacagGUCCUGGACCCUcGCa -3'
miRNA:   3'- aGGCCC-UCUAG--------CGGGACCUGGGGcUG- -5'
8978 3' -62.2 NC_002512.2 + 116358 0.72 0.408846
Target:  5'- aCCGGGAGAcggggagggucaugcUgGCCCUGcGGuCCCCGGg -3'
miRNA:   3'- aGGCCCUCU---------------AgCGGGAC-CU-GGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 86089 0.72 0.3977
Target:  5'- aCCGGGAGAacaGCCggcggcucaUGGACCCgGGCg -3'
miRNA:   3'- aGGCCCUCUag-CGGg--------ACCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 128175 0.73 0.38212
Target:  5'- cCCGGGgacgAGGUCGCCgagcGGGCCgCCGGCg -3'
miRNA:   3'- aGGCCC----UCUAGCGGga--CCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 122868 0.76 0.259786
Target:  5'- gUCGGGAGcgCGCCCggcucucggccGACCCCGGCc -3'
miRNA:   3'- aGGCCCUCuaGCGGGac---------CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 3403 0.75 0.278735
Target:  5'- -gCGaGGGGAgCGCCC-GGGCCCCGGCc -3'
miRNA:   3'- agGC-CCUCUaGCGGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 31165 0.75 0.278735
Target:  5'- cCCGGGAGA-CGCaccgCCUGGugACCUCGACg -3'
miRNA:   3'- aGGCCCUCUaGCG----GGACC--UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 142071 0.74 0.317199
Target:  5'- gCCGGGGGAUCGCUCgggGGugCaaCCGAa -3'
miRNA:   3'- aGGCCCUCUAGCGGGa--CCugG--GGCUg -5'
8978 3' -62.2 NC_002512.2 + 72795 0.74 0.330879
Target:  5'- gCCGGGAcGGgccCGCCgUGGGCgCCGGCg -3'
miRNA:   3'- aGGCCCU-CUa--GCGGgACCUGgGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 122271 0.73 0.359525
Target:  5'- gCCGcGGGGA-CGUCCUGGAgCCCGuCa -3'
miRNA:   3'- aGGC-CCUCUaGCGGGACCUgGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 49735 0.73 0.359525
Target:  5'- cUCGGGAcgGAggcCGUCCUGGACcgCCCGACg -3'
miRNA:   3'- aGGCCCU--CUa--GCGGGACCUG--GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 106714 0.73 0.359525
Target:  5'- cUCCGGGAuGAccgCGCuCCUGuccgccuccucGGCCCCGGCg -3'
miRNA:   3'- -AGGCCCU-CUa--GCG-GGAC-----------CUGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.