miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 157071 0.66 0.777092
Target:  5'- cCCGGGguccgGGGUCGCC--GGcGCCCaCGGCg -3'
miRNA:   3'- aGGCCC-----UCUAGCGGgaCC-UGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 132539 0.67 0.722543
Target:  5'- cUCCGcGGGcGGcgccgucggccucUcCGCCCUcGACCCCGGCg -3'
miRNA:   3'- -AGGC-CCU-CU-------------A-GCGGGAcCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 213811 0.67 0.714243
Target:  5'- cCCGGGAGGguuCCCUGGACgagaguCUCGAg -3'
miRNA:   3'- aGGCCCUCUagcGGGACCUG------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 197381 1.09 0.001473
Target:  5'- gUCCGGGAGAUCGCCCUGGACCCCGACu -3'
miRNA:   3'- -AGGCCCUCUAGCGGGACCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 185420 0.66 0.777092
Target:  5'- cCCGGGg---CGCCCUGGAgguCUUCGAg -3'
miRNA:   3'- aGGCCCucuaGCGGGACCU---GGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 108510 0.66 0.777092
Target:  5'- gCCGGGcccggCGCCCgaccggccggGGACCCgaCGGCg -3'
miRNA:   3'- aGGCCCucua-GCGGGa---------CCUGGG--GCUG- -5'
8978 3' -62.2 NC_002512.2 + 208682 0.66 0.76839
Target:  5'- cCCGGGGGccgcUGuCCCUGGACggguaCCCGGg -3'
miRNA:   3'- aGGCCCUCua--GC-GGGACCUG-----GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 146256 0.66 0.763119
Target:  5'- aCCGGGAccuggugggccgccuGAaCGCCgUGuccaACCCCGGCg -3'
miRNA:   3'- aGGCCCU---------------CUaGCGGgACc---UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 143590 0.66 0.74889
Target:  5'- --aGGGAGG-CGCCCUugcgugcGGGCCCCcgucuccGGCg -3'
miRNA:   3'- aggCCCUCUaGCGGGA-------CCUGGGG-------CUG- -5'
8978 3' -62.2 NC_002512.2 + 99609 0.67 0.727131
Target:  5'- cCCGGGccccgcgcucgucgcGGucGUCGCCCUcGGAgggCCCGGCg -3'
miRNA:   3'- aGGCCC---------------UC--UAGCGGGA-CCUg--GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 98233 0.66 0.732613
Target:  5'- cUCCGGGuGcucUCGUCgC-GGACCCCGuACu -3'
miRNA:   3'- -AGGCCCuCu--AGCGG-GaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 189502 0.66 0.750681
Target:  5'- aCCGccagguGGAGA-CGCUCcGGGCCCgGGCu -3'
miRNA:   3'- aGGC------CCUCUaGCGGGaCCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 155658 0.66 0.777092
Target:  5'- gUCCGGccGuUCGCCCcgcgucgGGACCgCGGCc -3'
miRNA:   3'- -AGGCCcuCuAGCGGGa------CCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 125063 0.66 0.732613
Target:  5'- gCCGGGAcgggacguucGA-CGCCCUGGAguacaaCCCGcCg -3'
miRNA:   3'- aGGCCCU----------CUaGCGGGACCUg-----GGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 219839 0.66 0.777092
Target:  5'- gUCGGGGGGUCcgGCCCgggggcGGAUCgCgGACg -3'
miRNA:   3'- aGGCCCUCUAG--CGGGa-----CCUGG-GgCUG- -5'
8978 3' -62.2 NC_002512.2 + 211723 0.66 0.759585
Target:  5'- aCgGGGAGcugugccUCGgCCUGG-CCCgCGACg -3'
miRNA:   3'- aGgCCCUCu------AGCgGGACCuGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 196436 0.66 0.728961
Target:  5'- gUCGGGAGAggUCGgggccauggaauaCCUGGGCUgCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCg------------GGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 218601 0.67 0.714243
Target:  5'- cCCGGGGucUCGCCCgcGGACUCgaagGACg -3'
miRNA:   3'- aGGCCCUcuAGCGGGa-CCUGGGg---CUG- -5'
8978 3' -62.2 NC_002512.2 + 194832 0.66 0.777092
Target:  5'- aCCGuGGuGcuGUCccgGCCCgugcGGACCCCGAUc -3'
miRNA:   3'- aGGC-CCuC--UAG---CGGGa---CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 127830 0.66 0.76839
Target:  5'- cUCCGGGAGGUCGUCggcGGcguccGCCgCGAa -3'
miRNA:   3'- -AGGCCCUCUAGCGGga-CC-----UGGgGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.