miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 2491 0.67 0.723462
Target:  5'- gUCCGGGcg---GCCUUGGGgaacggaucucCCCCGACg -3'
miRNA:   3'- -AGGCCCucuagCGGGACCU-----------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 3403 0.75 0.278735
Target:  5'- -gCGaGGGGAgCGCCC-GGGCCCCGGCc -3'
miRNA:   3'- agGC-CCUCUaGCGGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 4457 0.66 0.759585
Target:  5'- -gCGGGGGucggcGUCgGCCCcaacccGACCCCGACc -3'
miRNA:   3'- agGCCCUC-----UAG-CGGGac----CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 5360 0.68 0.610417
Target:  5'- cCCGGGAccuguGGUCcuccgGCUCUGGcGCaCCCGACa -3'
miRNA:   3'- aGGCCCU-----CUAG-----CGGGACC-UG-GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 5524 0.7 0.49909
Target:  5'- cCCGGaccGAGGUcuccCGCCC-GcGACCCCGGCg -3'
miRNA:   3'- aGGCC---CUCUA----GCGGGaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 5818 0.66 0.768391
Target:  5'- cUCCGuGGAGAggucgcagaCGCCCgacGAgucguCCCCGGCg -3'
miRNA:   3'- -AGGC-CCUCUa--------GCGGGac-CU-----GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 8365 0.68 0.648426
Target:  5'- -gCGGGAG--CGCCgaGGAUCCgCGGCg -3'
miRNA:   3'- agGCCCUCuaGCGGgaCCUGGG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 9681 0.71 0.446799
Target:  5'- cCCGGGc---CGCCgUcGGGCCCCGGCg -3'
miRNA:   3'- aGGCCCucuaGCGGgA-CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 9837 0.78 0.185092
Target:  5'- cUCGGGcggagccaugucgAGAUCGCCC-GGACCCCGAg -3'
miRNA:   3'- aGGCCC-------------UCUAGCGGGaCCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 9942 0.67 0.717939
Target:  5'- cCCGGGGGAUCcaCCCUcccccgcgcgucgacGGAgaCCGACg -3'
miRNA:   3'- aGGCCCUCUAGc-GGGA---------------CCUggGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 10215 0.7 0.544648
Target:  5'- cUCGGGcGGcgCGCCCa-GAUCCCGACg -3'
miRNA:   3'- aGGCCC-UCuaGCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 11576 0.67 0.704964
Target:  5'- aCgGGGAGcacgagcggcCGCCCagggccggGGACCCCGAg -3'
miRNA:   3'- aGgCCCUCua--------GCGGGa-------CCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 14068 0.66 0.750682
Target:  5'- gCCGGGAGGggaGUCCccGGCCCCGu- -3'
miRNA:   3'- aGGCCCUCUag-CGGGacCUGGGGCug -5'
8978 3' -62.2 NC_002512.2 + 18731 0.66 0.750682
Target:  5'- cUCGGGcAGcaCGCCCUGGAugacgcccagguCCUCGGCc -3'
miRNA:   3'- aGGCCC-UCuaGCGGGACCU------------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 21093 0.66 0.759585
Target:  5'- cUCCGGGGcGAcCGCCgUcucagacgcGGACCuuGGCc -3'
miRNA:   3'- -AGGCCCU-CUaGCGGgA---------CCUGGggCUG- -5'
8978 3' -62.2 NC_002512.2 + 31165 0.75 0.278735
Target:  5'- cCCGGGAGA-CGCaccgCCUGGugACCUCGACg -3'
miRNA:   3'- aGGCCCUCUaGCG----GGACC--UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 37309 0.68 0.657917
Target:  5'- -gCGGGAcGGUcCGCUCcGaGGCCCCGGCc -3'
miRNA:   3'- agGCCCU-CUA-GCGGGaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 38056 0.67 0.695633
Target:  5'- -gUGGGAGggCGCaa-GGACCCCGcGCg -3'
miRNA:   3'- agGCCCUCuaGCGggaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 42208 0.68 0.619913
Target:  5'- -aCGGGAGAUcCGUCCUGaccGugCCCG-Cg -3'
miRNA:   3'- agGCCCUCUA-GCGGGAC---CugGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 42781 0.7 0.523501
Target:  5'- uUCCGGGAcacAUCGCCauCUcuuuacucacggaaGGACCCCGAg -3'
miRNA:   3'- -AGGCCCUc--UAGCGG--GA--------------CCUGGGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.