miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 227951 0.67 0.713318
Target:  5'- -gCGGGGGAgCGCgggggagCCggagaggaGGGCCCCGGCg -3'
miRNA:   3'- agGCCCUCUaGCG-------GGa-------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 227355 0.69 0.582034
Target:  5'- -aCGGGAcggaGGagGCCCgGGGCCgCCGGCg -3'
miRNA:   3'- agGCCCU----CUagCGGGaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 226473 0.71 0.490177
Target:  5'- -gCGGGAGGagGCCg-GGGCCCgGGCg -3'
miRNA:   3'- agGCCCUCUagCGGgaCCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 225799 0.68 0.619913
Target:  5'- gCCGGGccgcgggcggccGGGUgGCCUgGGACCUCGAg -3'
miRNA:   3'- aGGCCC------------UCUAgCGGGaCCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 224621 0.7 0.544648
Target:  5'- aCCGGGcucgGGGUCGCCgCcGcGGCCUCGGCc -3'
miRNA:   3'- aGGCCC----UCUAGCGG-GaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 224367 0.67 0.695632
Target:  5'- -gCGGGAGAccUCgGUCCgGGAccucgcgaCCCCGGCg -3'
miRNA:   3'- agGCCCUCU--AG-CGGGaCCU--------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 224020 0.69 0.600934
Target:  5'- gUCGGacGA-CGCCCgGGACUCCGACg -3'
miRNA:   3'- aGGCCcuCUaGCGGGaCCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 223938 0.71 0.481339
Target:  5'- aCgGGGAGGUCGauCCCUGGGgacggUUCCGGCg -3'
miRNA:   3'- aGgCCCUCUAGC--GGGACCU-----GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 223737 0.68 0.610416
Target:  5'- aCCGGGAGAcCGUCgUGGAggucgugUCCGACg -3'
miRNA:   3'- aGGCCCUCUaGCGGgACCUg------GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 223050 0.69 0.563258
Target:  5'- gUCCGGGAGGUgC-CCCUGGucGCCaCCGu- -3'
miRNA:   3'- -AGGCCCUCUA-GcGGGACC--UGG-GGCug -5'
8978 3' -62.2 NC_002512.2 + 222613 0.68 0.610416
Target:  5'- cCCGGGGccucgCGCCC--GAUCCCGACg -3'
miRNA:   3'- aGGCCCUcua--GCGGGacCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 220970 0.68 0.671172
Target:  5'- cCCGGccGAGGcCGCCCUGGccaggagggucgaguGCCCCaACg -3'
miRNA:   3'- aGGCC--CUCUaGCGGGACC---------------UGGGGcUG- -5'
8978 3' -62.2 NC_002512.2 + 219839 0.66 0.777092
Target:  5'- gUCGGGGGGUCcgGCCCgggggcGGAUCgCgGACg -3'
miRNA:   3'- aGGCCCUCUAG--CGGGa-----CCUGG-GgCUG- -5'
8978 3' -62.2 NC_002512.2 + 219654 0.67 0.676838
Target:  5'- aCCGGaGGuUCGCCCgucgGGAUCUgGGCg -3'
miRNA:   3'- aGGCCcUCuAGCGGGa---CCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 218856 0.73 0.344988
Target:  5'- gCCGacGAGGUCGCCCgGGGCaCCGACg -3'
miRNA:   3'- aGGCc-CUCUAGCGGGaCCUGgGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 218601 0.67 0.714243
Target:  5'- cCCGGGGucUCGCCCgcGGACUCgaagGACg -3'
miRNA:   3'- aGGCCCUcuAGCGGGa-CCUGGGg---CUG- -5'
8978 3' -62.2 NC_002512.2 + 217522 0.67 0.704964
Target:  5'- cUCGGGGGGUCGCgguucaCCUGGuugaaCCgGGCg -3'
miRNA:   3'- aGGCCCUCUAGCG------GGACCug---GGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 216301 0.69 0.600934
Target:  5'- cCCGGGgacguGGGUCaccuGCaUCUGcGGCCCCGACg -3'
miRNA:   3'- aGGCCC-----UCUAG----CG-GGAC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 215636 0.66 0.777092
Target:  5'- gUCGaGGAGAUCgGUCCUGcGuuCCCGAa -3'
miRNA:   3'- aGGC-CCUCUAG-CGGGAC-CugGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 215540 0.72 0.389859
Target:  5'- cUCCGGGAGAUCcUgCUGGccgucggcGCCUCGGCg -3'
miRNA:   3'- -AGGCCCUCUAGcGgGACC--------UGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.