miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 18731 0.66 0.750682
Target:  5'- cUCGGGcAGcaCGCCCUGGAugacgcccagguCCUCGGCc -3'
miRNA:   3'- aGGCCC-UCuaGCGGGACCU------------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 116950 0.66 0.750682
Target:  5'- gUCCGcGGGcucGcgCGCCaCcGGGCCgCCGACg -3'
miRNA:   3'- -AGGC-CCU---CuaGCGG-GaCCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 85974 0.66 0.750682
Target:  5'- gUCGGcGAGuUCGCCCUcucGGACgaCGACa -3'
miRNA:   3'- aGGCC-CUCuAGCGGGA---CCUGggGCUG- -5'
8978 3' -62.2 NC_002512.2 + 99212 0.66 0.750682
Target:  5'- cUCCGcGGccgccgccguguGGGUCGUgcgcaUCUGGuGCCCCGGCg -3'
miRNA:   3'- -AGGC-CC------------UCUAGCG-----GGACC-UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 189502 0.66 0.750681
Target:  5'- aCCGccagguGGAGA-CGCUCcGGGCCCgGGCu -3'
miRNA:   3'- aGGC------CCUCUaGCGGGaCCUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 143590 0.66 0.74889
Target:  5'- --aGGGAGG-CGCCCUugcgugcGGGCCCCcgucuccGGCg -3'
miRNA:   3'- aggCCCUCUaGCGGGA-------CCUGGGG-------CUG- -5'
8978 3' -62.2 NC_002512.2 + 101449 0.66 0.741689
Target:  5'- gCUGGGccauGGcCGCCCgcgaggaGGGCUCCGGCg -3'
miRNA:   3'- aGGCCCu---CUaGCGGGa------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 164269 0.66 0.741688
Target:  5'- gUCGGGucGAUCGCCUcGGGCUUCGuCu -3'
miRNA:   3'- aGGCCCu-CUAGCGGGaCCUGGGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 125063 0.66 0.732613
Target:  5'- gCCGGGAcgggacguucGA-CGCCCUGGAguacaaCCCGcCg -3'
miRNA:   3'- aGGCCCU----------CUaGCGGGACCUg-----GGGCuG- -5'
8978 3' -62.2 NC_002512.2 + 98233 0.66 0.732613
Target:  5'- cUCCGGGuGcucUCGUCgC-GGACCCCGuACu -3'
miRNA:   3'- -AGGCCCuCu--AGCGG-GaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 196436 0.66 0.728961
Target:  5'- gUCGGGAGAggUCGgggccauggaauaCCUGGGCUgCGGCg -3'
miRNA:   3'- aGGCCCUCU--AGCg------------GGACCUGGgGCUG- -5'
8978 3' -62.2 NC_002512.2 + 99609 0.67 0.727131
Target:  5'- cCCGGGccccgcgcucgucgcGGucGUCGCCCUcGGAgggCCCGGCg -3'
miRNA:   3'- aGGCCC---------------UC--UAGCGGGA-CCUg--GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 104464 0.67 0.723462
Target:  5'- cUCgCGGGuGGugucgucguUCGCCCUcGGGCCCgGGg -3'
miRNA:   3'- -AG-GCCCuCU---------AGCGGGA-CCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 44838 0.67 0.723462
Target:  5'- cCCGGGucggCGUCCaGGAuccuagggcucuCCCCGACg -3'
miRNA:   3'- aGGCCCucuaGCGGGaCCU------------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 2491 0.67 0.723462
Target:  5'- gUCCGGGcg---GCCUUGGGgaacggaucucCCCCGACg -3'
miRNA:   3'- -AGGCCCucuagCGGGACCU-----------GGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 127568 0.67 0.723462
Target:  5'- gUCCGGGAG---GCCCgacGGACCguccgCGACg -3'
miRNA:   3'- -AGGCCCUCuagCGGGa--CCUGGg----GCUG- -5'
8978 3' -62.2 NC_002512.2 + 132539 0.67 0.722543
Target:  5'- cUCCGcGGGcGGcgccgucggccucUcCGCCCUcGACCCCGGCg -3'
miRNA:   3'- -AGGC-CCU-CU-------------A-GCGGGAcCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 9942 0.67 0.717939
Target:  5'- cCCGGGGGAUCcaCCCUcccccgcgcgucgacGGAgaCCGACg -3'
miRNA:   3'- aGGCCCUCUAGc-GGGA---------------CCUggGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 135345 0.67 0.715168
Target:  5'- gCCGGGGugcugcuggccgucGAccgcuUCGUCCUGGGCggguucgaagacgcgCCCGACg -3'
miRNA:   3'- aGGCCCU--------------CU-----AGCGGGACCUG---------------GGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 218601 0.67 0.714243
Target:  5'- cCCGGGGucUCGCCCgcGGACUCgaagGACg -3'
miRNA:   3'- aGGCCCUcuAGCGGGa-CCUGGGg---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.