miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 3' -62.2 NC_002512.2 + 202184 0.67 0.714243
Target:  5'- -aCGGGAGAaCGCgCguuccGGAUCgCCGACg -3'
miRNA:   3'- agGCCCUCUaGCGgGa----CCUGG-GGCUG- -5'
8978 3' -62.2 NC_002512.2 + 213811 0.67 0.714243
Target:  5'- cCCGGGAGGguuCCCUGGACgagaguCUCGAg -3'
miRNA:   3'- aGGCCCUCUagcGGGACCUG------GGGCUg -5'
8978 3' -62.2 NC_002512.2 + 218601 0.67 0.714243
Target:  5'- cCCGGGGucUCGCCCgcGGACUCgaagGACg -3'
miRNA:   3'- aGGCCCUcuAGCGGGa-CCUGGGg---CUG- -5'
8978 3' -62.2 NC_002512.2 + 98968 0.67 0.714243
Target:  5'- aCCGGGccGAcCGCgCUUGaGACCCgGACg -3'
miRNA:   3'- aGGCCCu-CUaGCG-GGAC-CUGGGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 121423 0.67 0.714243
Target:  5'- --aGGGAGA-CGCCCgcggagucGGCCCCGGa -3'
miRNA:   3'- aggCCCUCUaGCGGGac------CUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 227951 0.67 0.713318
Target:  5'- -gCGGGGGAgCGCgggggagCCggagaggaGGGCCCCGGCg -3'
miRNA:   3'- agGCCCUCUaGCG-------GGa-------CCUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 167810 0.67 0.704964
Target:  5'- -gCGGGcccccaacuacgAGGUgGCCgaGGACCCCGcGCa -3'
miRNA:   3'- agGCCC------------UCUAgCGGgaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 217522 0.67 0.704964
Target:  5'- cUCGGGGGGUCGCgguucaCCUGGuugaaCCgGGCg -3'
miRNA:   3'- aGGCCCUCUAGCG------GGACCug---GGgCUG- -5'
8978 3' -62.2 NC_002512.2 + 95242 0.67 0.704964
Target:  5'- cUCCGGaGGGggCGUCCggaGGGCCgCgCGGCu -3'
miRNA:   3'- -AGGCC-CUCuaGCGGGa--CCUGG-G-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 86180 0.67 0.704964
Target:  5'- -gCGGGAGcuggaggucgCGCCCUccGugCCCGACa -3'
miRNA:   3'- agGCCCUCua--------GCGGGAc-CugGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 11576 0.67 0.704964
Target:  5'- aCgGGGAGcacgagcggcCGCCCagggccggGGACCCCGAg -3'
miRNA:   3'- aGgCCCUCua--------GCGGGa-------CCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 74498 0.67 0.704033
Target:  5'- cUCCGc--GAUCGCCCgccGGcgccgccGCCCCGACc -3'
miRNA:   3'- -AGGCccuCUAGCGGGa--CC-------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 135156 0.67 0.695633
Target:  5'- aCCGGGcGGGguUCG-CCUGGAUCCUGGu -3'
miRNA:   3'- aGGCCC-UCU--AGCgGGACCUGGGGCUg -5'
8978 3' -62.2 NC_002512.2 + 133344 0.67 0.695633
Target:  5'- gUCCGGGA--UC-CCC-GG-CCCCGGCu -3'
miRNA:   3'- -AGGCCCUcuAGcGGGaCCuGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 66578 0.67 0.695633
Target:  5'- -aCGaGGAGAcCGCCgCUGGucugguagACCUCGACg -3'
miRNA:   3'- agGC-CCUCUaGCGG-GACC--------UGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 59160 0.67 0.695633
Target:  5'- aCCGGGccuGGAacccgUGCCUcGuGACCCCGGCc -3'
miRNA:   3'- aGGCCC---UCUa----GCGGGaC-CUGGGGCUG- -5'
8978 3' -62.2 NC_002512.2 + 38056 0.67 0.695633
Target:  5'- -gUGGGAGggCGCaa-GGACCCCGcGCg -3'
miRNA:   3'- agGCCCUCuaGCGggaCCUGGGGC-UG- -5'
8978 3' -62.2 NC_002512.2 + 101808 0.67 0.695632
Target:  5'- uUCCGaGGAGG-CuUCCUGGGCgCCgCGACg -3'
miRNA:   3'- -AGGC-CCUCUaGcGGGACCUG-GG-GCUG- -5'
8978 3' -62.2 NC_002512.2 + 146801 0.67 0.695632
Target:  5'- aCCcGGAGGagGCCCgGGACCUgGAg -3'
miRNA:   3'- aGGcCCUCUagCGGGaCCUGGGgCUg -5'
8978 3' -62.2 NC_002512.2 + 224367 0.67 0.695632
Target:  5'- -gCGGGAGAccUCgGUCCgGGAccucgcgaCCCCGGCg -3'
miRNA:   3'- agGCCCUCU--AG-CGGGaCCU--------GGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.