miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 121623 0.66 0.958397
Target:  5'- gAUGUCGAGCuCCCcGUGCGgccucaccaagaUCCUGCu -3'
miRNA:   3'- -UGUAGCUCG-GGGuCAUGUag----------AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 133245 0.66 0.956204
Target:  5'- gGCggCGGcGCCCCGGUcGCGgUUUCCuCGCc -3'
miRNA:   3'- -UGuaGCU-CGGGGUCA-UGU-AGAGG-GCG- -5'
8978 5' -55.5 NC_002512.2 + 87700 0.66 0.956204
Target:  5'- gACA-CGA-CCCCGGauccuUCUCCCGCc -3'
miRNA:   3'- -UGUaGCUcGGGGUCaugu-AGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 9267 0.66 0.956204
Target:  5'- uCGUCGcAGUCCCGGcACAgcaccagCUCgCGCa -3'
miRNA:   3'- uGUAGC-UCGGGGUCaUGUa------GAGgGCG- -5'
8978 5' -55.5 NC_002512.2 + 116404 0.66 0.959816
Target:  5'- -gGUCGcccugacGCCCUcguGGUucucCGUCUCCCGCu -3'
miRNA:   3'- ugUAGCu------CGGGG---UCAu---GUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 130150 0.66 0.959816
Target:  5'- gGCcgCGGGgCCCGGcgGCGggccggCCCGCg -3'
miRNA:   3'- -UGuaGCUCgGGGUCa-UGUaga---GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 99938 0.66 0.959816
Target:  5'- gGCGUCGGcugcugcuGCCgCCGGUGCcugAUCggccuggcCCCGCg -3'
miRNA:   3'- -UGUAGCU--------CGG-GGUCAUG---UAGa-------GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 18119 0.66 0.963218
Target:  5'- ---cCGGGCCUCc--ACGUcCUCCCGCa -3'
miRNA:   3'- uguaGCUCGGGGucaUGUA-GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 11024 0.66 0.959816
Target:  5'- gGCGUCGGuGCCCCGGgcgACcUCgUCgGCg -3'
miRNA:   3'- -UGUAGCU-CGGGGUCa--UGuAGaGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 67755 0.66 0.959816
Target:  5'- cUcgCGAGCCggGGU-CGUCUCCgGCg -3'
miRNA:   3'- uGuaGCUCGGggUCAuGUAGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 149031 0.66 0.955078
Target:  5'- gACAcCGAGCCCCGcGUcccgaggcucgccuACGgggCCCGCu -3'
miRNA:   3'- -UGUaGCUCGGGGU-CA--------------UGUagaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 80719 0.67 0.939573
Target:  5'- gGCGcgCGGGCCCgCGGgcgGCAcCggcCCCGCg -3'
miRNA:   3'- -UGUa-GCUCGGG-GUCa--UGUaGa--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 40370 0.67 0.939573
Target:  5'- cGCggCGAGCCCgGGcccggaGCGUCUCCaccugGCg -3'
miRNA:   3'- -UGuaGCUCGGGgUCa-----UGUAGAGGg----CG- -5'
8978 5' -55.5 NC_002512.2 + 29387 0.67 0.939573
Target:  5'- ---aCGAGCCCCGGUcggaggacGCcgCcCUCGCa -3'
miRNA:   3'- uguaGCUCGGGGUCA--------UGuaGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 15289 0.67 0.948331
Target:  5'- -aGUCGGGCUgCAGgaagaGCGUCUCgUCGCc -3'
miRNA:   3'- ugUAGCUCGGgGUCa----UGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 25217 0.67 0.948331
Target:  5'- aGCGggagCGAGCCgCCGGcg-AUCcCCCGCg -3'
miRNA:   3'- -UGUa---GCUCGG-GGUCaugUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 112003 0.67 0.952377
Target:  5'- aGCGaCGGGCCCCcg-GCGUCcgUCuuGCg -3'
miRNA:   3'- -UGUaGCUCGGGGucaUGUAG--AGggCG- -5'
8978 5' -55.5 NC_002512.2 + 2128 0.67 0.952377
Target:  5'- gGCGUCGAGCgUUCGGU-CGUCgccuccCCCGUc -3'
miRNA:   3'- -UGUAGCUCG-GGGUCAuGUAGa-----GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 24886 0.67 0.952377
Target:  5'- cGCGUCGuuucGCCCCcgccuuccGGUcccCGUCgCCCGCg -3'
miRNA:   3'- -UGUAGCu---CGGGG--------UCAu--GUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 29593 0.67 0.944064
Target:  5'- gGCGgaCGAGCCCCAGUccgACggCUCgUCGUc -3'
miRNA:   3'- -UGUa-GCUCGGGGUCA---UGuaGAG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.