miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 91976 0.66 0.966413
Target:  5'- cACGUCcggaGGGCCgcguCCGG---GUCUCCCGCg -3'
miRNA:   3'- -UGUAG----CUCGG----GGUCaugUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 116711 0.66 0.966413
Target:  5'- aACAaCGcAGCCCCGGcACGUCcgacguggCCCGg -3'
miRNA:   3'- -UGUaGC-UCGGGGUCaUGUAGa-------GGGCg -5'
8978 5' -55.5 NC_002512.2 + 211776 0.66 0.966413
Target:  5'- gACGUgGAGgCCCGGgugGCcgCgggggccgUCCCGCc -3'
miRNA:   3'- -UGUAgCUCgGGGUCa--UGuaG--------AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 102314 0.66 0.964521
Target:  5'- uACAUCGccgagcggcugggccGGCUCCGGUACGacaagcgcguccUCggCCUGCa -3'
miRNA:   3'- -UGUAGC---------------UCGGGGUCAUGU------------AGa-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 87700 0.66 0.956204
Target:  5'- gACA-CGA-CCCCGGauccuUCUCCCGCc -3'
miRNA:   3'- -UGUaGCUcGGGGUCaugu-AGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 181312 0.66 0.969408
Target:  5'- gACAcCaGGCUCCGGUACAgCUCCaGCc -3'
miRNA:   3'- -UGUaGcUCGGGGUCAUGUaGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 116404 0.66 0.959816
Target:  5'- -gGUCGcccugacGCCCUcguGGUucucCGUCUCCCGCu -3'
miRNA:   3'- ugUAGCu------CGGGG---UCAu---GUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 117209 0.66 0.967635
Target:  5'- uCAagGAGCCCCcGUACAcggucagcaccuucgUCUCCaacgaCGCg -3'
miRNA:   3'- uGUagCUCGGGGuCAUGU---------------AGAGG-----GCG- -5'
8978 5' -55.5 NC_002512.2 + 36290 0.66 0.969408
Target:  5'- cGCGUC-AGCUCCccuGU-CGUC-CCCGCg -3'
miRNA:   3'- -UGUAGcUCGGGGu--CAuGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 9267 0.66 0.956204
Target:  5'- uCGUCGcAGUCCCGGcACAgcaccagCUCgCGCa -3'
miRNA:   3'- uGUAGC-UCGGGGUCaUGUa------GAGgGCG- -5'
8978 5' -55.5 NC_002512.2 + 99938 0.66 0.959816
Target:  5'- gGCGUCGGcugcugcuGCCgCCGGUGCcugAUCggccuggcCCCGCg -3'
miRNA:   3'- -UGUAGCU--------CGG-GGUCAUG---UAGa-------GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 18119 0.66 0.963218
Target:  5'- ---cCGGGCCUCc--ACGUcCUCCCGCa -3'
miRNA:   3'- uguaGCUCGGGGucaUGUA-GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 145532 0.66 0.969408
Target:  5'- cGCGUCGGGCC--GGaGCA--UCCCGCu -3'
miRNA:   3'- -UGUAGCUCGGggUCaUGUagAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 222864 0.66 0.966413
Target:  5'- aACGaCGAGCCCggcaAGgcccUGCGgcUCUCCUGCg -3'
miRNA:   3'- -UGUaGCUCGGGg---UC----AUGU--AGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 190250 0.66 0.966413
Target:  5'- --uUCGcGGCCUaggaaacGUACAUCUCgCCGCa -3'
miRNA:   3'- uguAGC-UCGGGgu-----CAUGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 67755 0.66 0.959816
Target:  5'- cUcgCGAGCCggGGU-CGUCUCCgGCg -3'
miRNA:   3'- uGuaGCUCGGggUCAuGUAGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 11024 0.66 0.959816
Target:  5'- gGCGUCGGuGCCCCGGgcgACcUCgUCgGCg -3'
miRNA:   3'- -UGUAGCU-CGGGGUCa--UGuAGaGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 130150 0.66 0.959816
Target:  5'- gGCcgCGGGgCCCGGcgGCGggccggCCCGCg -3'
miRNA:   3'- -UGuaGCUCgGGGUCa-UGUaga---GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 133245 0.66 0.956204
Target:  5'- gGCggCGGcGCCCCGGUcGCGgUUUCCuCGCc -3'
miRNA:   3'- -UGuaGCU-CGGGGUCA-UGU-AGAGG-GCG- -5'
8978 5' -55.5 NC_002512.2 + 203492 0.66 0.966413
Target:  5'- uGCGUCGccAGCaCCAGgaaguuCAUCggCCCGCc -3'
miRNA:   3'- -UGUAGC--UCGgGGUCau----GUAGa-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.