miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 197417 1.12 0.003163
Target:  5'- gACAUCGAGCCCCAGUACAUCUCCCGCa -3'
miRNA:   3'- -UGUAGCUCGGGGUCAUGUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 24236 0.76 0.504836
Target:  5'- gGCGUCGGGCCCgCcGacgGCGUCcCCCGCg -3'
miRNA:   3'- -UGUAGCUCGGG-GuCa--UGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 198711 0.76 0.504836
Target:  5'- gACGUCGAGgucaCCaggCGGUGCGUCUCCCGg -3'
miRNA:   3'- -UGUAGCUCg---GG---GUCAUGUAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 97791 0.76 0.514321
Target:  5'- --cUCGAGCCCCGGUcgaGCG-CUCCgGCu -3'
miRNA:   3'- uguAGCUCGGGGUCA---UGUaGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 107615 0.75 0.562728
Target:  5'- ---aCGGGCUCCAGgACGUC-CCCGCg -3'
miRNA:   3'- uguaGCUCGGGGUCaUGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 216158 0.74 0.602308
Target:  5'- gGCGUCGcGCCCCu---CAggCUCCCGCg -3'
miRNA:   3'- -UGUAGCuCGGGGucauGUa-GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 165095 0.74 0.612272
Target:  5'- cCGUCGcuGGCgCCAGcACAucUCUCCCGCg -3'
miRNA:   3'- uGUAGC--UCGgGGUCaUGU--AGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 103485 0.74 0.632236
Target:  5'- gGCGUCGAcggcgcccgggGCCCCGG-GCGcUCUCCCGg -3'
miRNA:   3'- -UGUAGCU-----------CGGGGUCaUGU-AGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 135291 0.74 0.642221
Target:  5'- uGCuUCGGGCCCCAGUucGCcUgUCCgGCg -3'
miRNA:   3'- -UGuAGCUCGGGGUCA--UGuAgAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 28147 0.73 0.701701
Target:  5'- -gAUCGGcGCCCCAGccguCGUCUcccCCCGCg -3'
miRNA:   3'- ugUAGCU-CGGGGUCau--GUAGA---GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 213267 0.72 0.730799
Target:  5'- gACAUgGGGCCCguGUGCuucAUCagCCGCg -3'
miRNA:   3'- -UGUAgCUCGGGguCAUG---UAGagGGCG- -5'
8978 5' -55.5 NC_002512.2 + 139407 0.72 0.730799
Target:  5'- cCGUCGAggacGCCCCGGUG-AUCggggaCCCGCa -3'
miRNA:   3'- uGUAGCU----CGGGGUCAUgUAGa----GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 117403 0.72 0.740346
Target:  5'- gGCAUCGAGgaCCAGgGCGUCaUCCGCu -3'
miRNA:   3'- -UGUAGCUCggGGUCaUGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 182558 0.72 0.749805
Target:  5'- gGCcUCGAacgcGCCgCGGUACAUCUCCUccaGCa -3'
miRNA:   3'- -UGuAGCU----CGGgGUCAUGUAGAGGG---CG- -5'
8978 5' -55.5 NC_002512.2 + 165263 0.72 0.753561
Target:  5'- cGCGUCGcggAGCCCCGGaccccuuucagcgucUcCAUCUCgCCGCg -3'
miRNA:   3'- -UGUAGC---UCGGGGUC---------------AuGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 69925 0.72 0.759164
Target:  5'- -gGUCGAGgucUCCCGGUAgGUCUCCgGUc -3'
miRNA:   3'- ugUAGCUC---GGGGUCAUgUAGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 5513 0.71 0.768417
Target:  5'- -gGUCGcgaGGUCCCGGaccgAgGUCUCCCGCc -3'
miRNA:   3'- ugUAGC---UCGGGGUCa---UgUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 201936 0.71 0.776645
Target:  5'- gGCGaCGGGCCCgGGUACGugggagaccgcucUCcCCCGCu -3'
miRNA:   3'- -UGUaGCUCGGGgUCAUGU-------------AGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 2571 0.71 0.786567
Target:  5'- --cUCGGGCgCCGGcGCGUCUCCCcCa -3'
miRNA:   3'- uguAGCUCGgGGUCaUGUAGAGGGcG- -5'
8978 5' -55.5 NC_002512.2 + 154797 0.71 0.789245
Target:  5'- gACGUCGAGCCCCcgaaacggcgccucgACGUCgccgCCCGg -3'
miRNA:   3'- -UGUAGCUCGGGGuca------------UGUAGa---GGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.