miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 9690 0.69 0.882246
Target:  5'- cCGUCGGGCCCCGGcggGgGUucgcggaaccucCUCCCGa -3'
miRNA:   3'- uGUAGCUCGGGGUCa--UgUA------------GAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 42201 0.7 0.83759
Target:  5'- --uUCGGGuUCCCGGUGCcUCcgCCCGCc -3'
miRNA:   3'- uguAGCUC-GGGGUCAUGuAGa-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 20781 0.7 0.840781
Target:  5'- gACGUCGGGacacggggugacgaCCCGG-ACGUCgggcUCCCGCa -3'
miRNA:   3'- -UGUAGCUCg-------------GGGUCaUGUAG----AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 32502 0.7 0.845514
Target:  5'- -aGUCGGGgUCCAGgGCgAUCUCCCGg -3'
miRNA:   3'- ugUAGCUCgGGGUCaUG-UAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 108784 0.7 0.853253
Target:  5'- -gAUCGgauAGCCCgAGUACAggaUCUCCgCGUg -3'
miRNA:   3'- ugUAGC---UCGGGgUCAUGU---AGAGG-GCG- -5'
8978 5' -55.5 NC_002512.2 + 73983 0.7 0.853253
Target:  5'- cGCGUCG-GCgCCGGacuCGUC-CCCGCg -3'
miRNA:   3'- -UGUAGCuCGgGGUCau-GUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 118527 0.69 0.868153
Target:  5'- --cUCGAGCCCCGGguCGUC-CUCGUg -3'
miRNA:   3'- uguAGCUCGGGGUCauGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 58742 0.69 0.868153
Target:  5'- gGCGUCGcGCgCUCAGUcggacACGUCUCgCCGUu -3'
miRNA:   3'- -UGUAGCuCG-GGGUCA-----UGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 61769 0.69 0.875303
Target:  5'- cGCGgcCGGGCCCCucuccUACccugCUCCCGCa -3'
miRNA:   3'- -UGUa-GCUCGGGGuc---AUGua--GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 37077 0.7 0.81278
Target:  5'- cCGgugCGAucGCCCCGGgugGCGUUgugCCCGCg -3'
miRNA:   3'- uGUa--GCU--CGGGGUCa--UGUAGa--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 3411 0.71 0.804188
Target:  5'- aGCGccCGGGCCCCGGccuc-CUCCCGCc -3'
miRNA:   3'- -UGUa-GCUCGGGGUCauguaGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 2571 0.71 0.786567
Target:  5'- --cUCGGGCgCCGGcGCGUCUCCCcCa -3'
miRNA:   3'- uguAGCUCGgGGUCaUGUAGAGGGcG- -5'
8978 5' -55.5 NC_002512.2 + 97791 0.76 0.514321
Target:  5'- --cUCGAGCCCCGGUcgaGCG-CUCCgGCu -3'
miRNA:   3'- uguAGCUCGGGGUCA---UGUaGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 103485 0.74 0.632236
Target:  5'- gGCGUCGAcggcgcccgggGCCCCGG-GCGcUCUCCCGg -3'
miRNA:   3'- -UGUAGCU-----------CGGGGUCaUGU-AGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 135291 0.74 0.642221
Target:  5'- uGCuUCGGGCCCCAGUucGCcUgUCCgGCg -3'
miRNA:   3'- -UGuAGCUCGGGGUCA--UGuAgAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 28147 0.73 0.701701
Target:  5'- -gAUCGGcGCCCCAGccguCGUCUcccCCCGCg -3'
miRNA:   3'- ugUAGCU-CGGGGUCau--GUAGA---GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 139407 0.72 0.730799
Target:  5'- cCGUCGAggacGCCCCGGUG-AUCggggaCCCGCa -3'
miRNA:   3'- uGUAGCU----CGGGGUCAUgUAGa----GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 117403 0.72 0.740346
Target:  5'- gGCAUCGAGgaCCAGgGCGUCaUCCGCu -3'
miRNA:   3'- -UGUAGCUCggGGUCaUGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 69925 0.72 0.759164
Target:  5'- -gGUCGAGgucUCCCGGUAgGUCUCCgGUc -3'
miRNA:   3'- ugUAGCUC---GGGGUCAUgUAGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 5513 0.71 0.768417
Target:  5'- -gGUCGcgaGGUCCCGGaccgAgGUCUCCCGCc -3'
miRNA:   3'- ugUAGC---UCGGGGUCa---UgUAGAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.