miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 1690 0.69 0.895494
Target:  5'- gACcgCG-GCCUCgaAGUAgGUCUCCCGg -3'
miRNA:   3'- -UGuaGCuCGGGG--UCAUgUAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 2128 0.67 0.952377
Target:  5'- gGCGUCGAGCgUUCGGU-CGUCgccuccCCCGUc -3'
miRNA:   3'- -UGUAGCUCG-GGGUCAuGUAGa-----GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 2571 0.71 0.786567
Target:  5'- --cUCGGGCgCCGGcGCGUCUCCCcCa -3'
miRNA:   3'- uguAGCUCGgGGUCaUGUAGAGGGcG- -5'
8978 5' -55.5 NC_002512.2 + 3411 0.71 0.804188
Target:  5'- aGCGccCGGGCCCCGGccuc-CUCCCGCc -3'
miRNA:   3'- -UGUa-GCUCGGGGUCauguaGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 5513 0.71 0.768417
Target:  5'- -gGUCGcgaGGUCCCGGaccgAgGUCUCCCGCc -3'
miRNA:   3'- ugUAGC---UCGGGGUCa---UgUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 9267 0.66 0.956204
Target:  5'- uCGUCGcAGUCCCGGcACAgcaccagCUCgCGCa -3'
miRNA:   3'- uGUAGC-UCGGGGUCaUGUa------GAGgGCG- -5'
8978 5' -55.5 NC_002512.2 + 9690 0.69 0.882246
Target:  5'- cCGUCGGGCCCCGGcggGgGUucgcggaaccucCUCCCGa -3'
miRNA:   3'- uGUAGCUCGGGGUCa--UgUA------------GAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 11024 0.66 0.959816
Target:  5'- gGCGUCGGuGCCCCGGgcgACcUCgUCgGCg -3'
miRNA:   3'- -UGUAGCU-CGGGGUCa--UGuAGaGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 15289 0.67 0.948331
Target:  5'- -aGUCGGGCUgCAGgaagaGCGUCUCgUCGCc -3'
miRNA:   3'- ugUAGCUCGGgGUCa----UGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 18119 0.66 0.963218
Target:  5'- ---cCGGGCCUCc--ACGUcCUCCCGCa -3'
miRNA:   3'- uguaGCUCGGGGucaUGUA-GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 20781 0.7 0.840781
Target:  5'- gACGUCGGGacacggggugacgaCCCGG-ACGUCgggcUCCCGCa -3'
miRNA:   3'- -UGUAGCUCg-------------GGGUCaUGUAG----AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 24236 0.76 0.504836
Target:  5'- gGCGUCGGGCCCgCcGacgGCGUCcCCCGCg -3'
miRNA:   3'- -UGUAGCUCGGG-GuCa--UGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 24886 0.67 0.952377
Target:  5'- cGCGUCGuuucGCCCCcgccuuccGGUcccCGUCgCCCGCg -3'
miRNA:   3'- -UGUAGCu---CGGGG--------UCAu--GUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 25106 0.68 0.924743
Target:  5'- gGCGUCuccuucCCCCGGU-CGUC-CCCGCg -3'
miRNA:   3'- -UGUAGcuc---GGGGUCAuGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 25217 0.67 0.948331
Target:  5'- aGCGggagCGAGCCgCCGGcg-AUCcCCCGCg -3'
miRNA:   3'- -UGUa---GCUCGG-GGUCaugUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 28147 0.73 0.701701
Target:  5'- -gAUCGGcGCCCCAGccguCGUCUcccCCCGCg -3'
miRNA:   3'- ugUAGCU-CGGGGUCau--GUAGA---GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 29387 0.67 0.939573
Target:  5'- ---aCGAGCCCCGGUcggaggacGCcgCcCUCGCa -3'
miRNA:   3'- uguaGCUCGGGGUCA--------UGuaGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 29593 0.67 0.944064
Target:  5'- gGCGgaCGAGCCCCAGUccgACggCUCgUCGUc -3'
miRNA:   3'- -UGUa-GCUCGGGGUCA---UGuaGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 31874 0.67 0.929913
Target:  5'- cGCGUCccucGCCCCcGUcCGUCgCCCGCu -3'
miRNA:   3'- -UGUAGcu--CGGGGuCAuGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 32502 0.7 0.845514
Target:  5'- -aGUCGGGgUCCAGgGCgAUCUCCCGg -3'
miRNA:   3'- ugUAGCUCgGGGUCaUG-UAGAGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.