miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 227173 0.69 0.860801
Target:  5'- gGCAggaCGAGCagCCGGgggagcgGCAggcgCUCCCGCg -3'
miRNA:   3'- -UGUa--GCUCGg-GGUCa------UGUa---GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 226684 0.68 0.919344
Target:  5'- ---cUGAGCgCCGGgcCGUCgCCCGCg -3'
miRNA:   3'- uguaGCUCGgGGUCauGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 222864 0.66 0.966413
Target:  5'- aACGaCGAGCCCggcaAGgcccUGCGgcUCUCCUGCg -3'
miRNA:   3'- -UGUaGCUCGGGg---UC----AUGU--AGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 219042 0.67 0.929913
Target:  5'- uACGUCGucGGCCgCGGcGCGgggCUCcCCGCg -3'
miRNA:   3'- -UGUAGC--UCGGgGUCaUGUa--GAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 218362 0.67 0.952377
Target:  5'- -gGUCGA-UCCCGuucUGCAUCUCCCGg -3'
miRNA:   3'- ugUAGCUcGGGGUc--AUGUAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 218172 0.69 0.875303
Target:  5'- ---cCGuAGCCUCGGUACGccggCUCCUGCc -3'
miRNA:   3'- uguaGC-UCGGGGUCAUGUa---GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 216158 0.74 0.602308
Target:  5'- gGCGUCGcGCCCCu---CAggCUCCCGCg -3'
miRNA:   3'- -UGUAGCuCGGGGucauGUa-GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 214174 0.66 0.963218
Target:  5'- uACGUCGAGCCCgucauCGUCgcggaggaggaCCCGCu -3'
miRNA:   3'- -UGUAGCUCGGGgucauGUAGa----------GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 213519 0.67 0.946651
Target:  5'- gGCGUCGuccgggucgggguGCCCuCGGaGCGUCUgCUGCg -3'
miRNA:   3'- -UGUAGCu------------CGGG-GUCaUGUAGAgGGCG- -5'
8978 5' -55.5 NC_002512.2 + 213267 0.72 0.730799
Target:  5'- gACAUgGGGCCCguGUGCuucAUCagCCGCg -3'
miRNA:   3'- -UGUAgCUCGGGguCAUG---UAGagGGCG- -5'
8978 5' -55.5 NC_002512.2 + 213007 0.69 0.872468
Target:  5'- cCGUCGGGCCCggggcccucucgaGGUGCGUCcgCCgGCu -3'
miRNA:   3'- uGUAGCUCGGGg------------UCAUGUAGa-GGgCG- -5'
8978 5' -55.5 NC_002512.2 + 211776 0.66 0.966413
Target:  5'- gACGUgGAGgCCCGGgugGCcgCgggggccgUCCCGCc -3'
miRNA:   3'- -UGUAgCUCgGGGUCa--UGuaG--------AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 206707 0.7 0.853253
Target:  5'- cCGUCGucGCCCCGGUcCGUUUCaCCGg -3'
miRNA:   3'- uGUAGCu-CGGGGUCAuGUAGAG-GGCg -5'
8978 5' -55.5 NC_002512.2 + 203492 0.66 0.966413
Target:  5'- uGCGUCGccAGCaCCAGgaaguuCAUCggCCCGCc -3'
miRNA:   3'- -UGUAGC--UCGgGGUCau----GUAGa-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 202259 0.67 0.952377
Target:  5'- cGCcUCGcG-CCCGGaGCGUCUCuCCGCg -3'
miRNA:   3'- -UGuAGCuCgGGGUCaUGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 201936 0.71 0.776645
Target:  5'- gGCGaCGGGCCCgGGUACGugggagaccgcucUCcCCCGCu -3'
miRNA:   3'- -UGUaGCUCGGGgUCAUGU-------------AGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 198711 0.76 0.504836
Target:  5'- gACGUCGAGgucaCCaggCGGUGCGUCUCCCGg -3'
miRNA:   3'- -UGUAGCUCg---GG---GUCAUGUAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 197417 1.12 0.003163
Target:  5'- gACAUCGAGCCCCAGUACAUCUCCCGCa -3'
miRNA:   3'- -UGUAGCUCGGGGUCAUGUAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 191607 0.69 0.888978
Target:  5'- -gGUCGAGUCCUcg-GCGUCUUCuCGCg -3'
miRNA:   3'- ugUAGCUCGGGGucaUGUAGAGG-GCG- -5'
8978 5' -55.5 NC_002512.2 + 191537 0.68 0.913718
Target:  5'- -gGUCGGGCgaCCCGGcGgAUC-CCCGCg -3'
miRNA:   3'- ugUAGCUCG--GGGUCaUgUAGaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.