miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 36290 0.66 0.969408
Target:  5'- cGCGUC-AGCUCCccuGU-CGUC-CCCGCg -3'
miRNA:   3'- -UGUAGcUCGGGGu--CAuGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 37077 0.7 0.81278
Target:  5'- cCGgugCGAucGCCCCGGgugGCGUUgugCCCGCg -3'
miRNA:   3'- uGUa--GCU--CGGGGUCa--UGUAGa--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 38215 0.69 0.888978
Target:  5'- -gGUCGcccAGCCCCGGgacgcggACGUCU-CCGCc -3'
miRNA:   3'- ugUAGC---UCGGGGUCa------UGUAGAgGGCG- -5'
8978 5' -55.5 NC_002512.2 + 40370 0.67 0.939573
Target:  5'- cGCggCGAGCCCgGGcccggaGCGUCUCCaccugGCg -3'
miRNA:   3'- -UGuaGCUCGGGgUCa-----UGUAGAGGg----CG- -5'
8978 5' -55.5 NC_002512.2 + 42201 0.7 0.83759
Target:  5'- --uUCGGGuUCCCGGUGCcUCcgCCCGCc -3'
miRNA:   3'- uguAGCUC-GGGGUCAUGuAGa-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 49891 0.66 0.963218
Target:  5'- aGCAUaaGGGCUCCGccuuccucuguGUACAUCUCgUCGCa -3'
miRNA:   3'- -UGUAg-CUCGGGGU-----------CAUGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 50804 0.69 0.895494
Target:  5'- gGCGUCG-GCCCCGgcgcuGUACAgacaCUaCCUGCu -3'
miRNA:   3'- -UGUAGCuCGGGGU-----CAUGUa---GA-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 58742 0.69 0.868153
Target:  5'- gGCGUCGcGCgCUCAGUcggacACGUCUCgCCGUu -3'
miRNA:   3'- -UGUAGCuCG-GGGUCA-----UGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 61769 0.69 0.875303
Target:  5'- cGCGgcCGGGCCCCucuccUACccugCUCCCGCa -3'
miRNA:   3'- -UGUa-GCUCGGGGuc---AUGua--GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 67755 0.66 0.959816
Target:  5'- cUcgCGAGCCggGGU-CGUCUCCgGCg -3'
miRNA:   3'- uGuaGCUCGGggUCAuGUAGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 69925 0.72 0.759164
Target:  5'- -gGUCGAGgucUCCCGGUAgGUCUCCgGUc -3'
miRNA:   3'- ugUAGCUC---GGGGUCAUgUAGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 71722 0.68 0.924743
Target:  5'- uACAgacCGAuccuCCCauCAGUACcgCUCCCGCg -3'
miRNA:   3'- -UGUa--GCUc---GGG--GUCAUGuaGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 73983 0.7 0.853253
Target:  5'- cGCGUCG-GCgCCGGacuCGUC-CCCGCg -3'
miRNA:   3'- -UGUAGCuCGgGGUCau-GUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 74613 0.68 0.919344
Target:  5'- gGC-UCGAGCCgCCu---CggCUCCCGCg -3'
miRNA:   3'- -UGuAGCUCGG-GGucauGuaGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 79886 0.68 0.924743
Target:  5'- ----aGAGCCCCGGcgugggUUCCCGCg -3'
miRNA:   3'- uguagCUCGGGGUCaugua-GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 80719 0.67 0.939573
Target:  5'- gGCGcgCGGGCCCgCGGgcgGCAcCggcCCCGCg -3'
miRNA:   3'- -UGUa-GCUCGGG-GUCa--UGUaGa--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 82810 0.67 0.934857
Target:  5'- aGCAgCG-GCUCCAGaGCGUCgcccaacguUCCCGCc -3'
miRNA:   3'- -UGUaGCuCGGGGUCaUGUAG---------AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 84510 0.69 0.895494
Target:  5'- cGCGUCGGGCuCCCAGU-CGUagccCUCGUa -3'
miRNA:   3'- -UGUAGCUCG-GGGUCAuGUAga--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 87700 0.66 0.956204
Target:  5'- gACA-CGA-CCCCGGauccuUCUCCCGCc -3'
miRNA:   3'- -UGUaGCUcGGGGUCaugu-AGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 87841 0.66 0.959816
Target:  5'- gGCGUCGGGCCCUcgcGGcGgGUCgCCgGCc -3'
miRNA:   3'- -UGUAGCUCGGGG---UCaUgUAGaGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.