miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8978 5' -55.5 NC_002512.2 + 127495 0.71 0.792798
Target:  5'- gACGUCGgcuggaaccucggcGGCCuUCAcGUACGUCUCCCGa -3'
miRNA:   3'- -UGUAGC--------------UCGG-GGU-CAUGUAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 105019 0.71 0.795448
Target:  5'- cGCGUCGAGCCCCgcgcaGGUcauguagcagaaACAggUCCCGg -3'
miRNA:   3'- -UGUAGCUCGGGG-----UCA------------UGUagAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 143603 0.71 0.795448
Target:  5'- uGCGUgCGGGCCCC----CGUCUCCgGCg -3'
miRNA:   3'- -UGUA-GCUCGGGGucauGUAGAGGgCG- -5'
8978 5' -55.5 NC_002512.2 + 3411 0.71 0.804188
Target:  5'- aGCGccCGGGCCCCGGccuc-CUCCCGCc -3'
miRNA:   3'- -UGUa-GCUCGGGGUCauguaGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 128861 0.7 0.81278
Target:  5'- cGCG-CGGGCCCUGGUGCugcgCCUGCu -3'
miRNA:   3'- -UGUaGCUCGGGGUCAUGuagaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 105708 0.7 0.81278
Target:  5'- gGCGgaCGAGCagCCAgGUGCA-CUCCCGCu -3'
miRNA:   3'- -UGUa-GCUCGg-GGU-CAUGUaGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 37077 0.7 0.81278
Target:  5'- cCGgugCGAucGCCCCGGgugGCGUUgugCCCGCg -3'
miRNA:   3'- uGUa--GCU--CGGGGUCa--UGUAGa--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 127668 0.7 0.83759
Target:  5'- -gGUCGAgggccGCUCCGGccgcgGCgAUCUCCCGCu -3'
miRNA:   3'- ugUAGCU-----CGGGGUCa----UG-UAGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 42201 0.7 0.83759
Target:  5'- --uUCGGGuUCCCGGUGCcUCcgCCCGCc -3'
miRNA:   3'- uguAGCUC-GGGGUCAUGuAGa-GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 143092 0.7 0.83759
Target:  5'- uACAcCG-GCUCCAG-GCGcUCUCCCGCc -3'
miRNA:   3'- -UGUaGCuCGGGGUCaUGU-AGAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 20781 0.7 0.840781
Target:  5'- gACGUCGGGacacggggugacgaCCCGG-ACGUCgggcUCCCGCa -3'
miRNA:   3'- -UGUAGCUCg-------------GGGUCaUGUAG----AGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 32502 0.7 0.845514
Target:  5'- -aGUCGGGgUCCAGgGCgAUCUCCCGg -3'
miRNA:   3'- ugUAGCUCgGGGUCaUG-UAGAGGGCg -5'
8978 5' -55.5 NC_002512.2 + 108784 0.7 0.853253
Target:  5'- -gAUCGgauAGCCCgAGUACAggaUCUCCgCGUg -3'
miRNA:   3'- ugUAGC---UCGGGgUCAUGU---AGAGG-GCG- -5'
8978 5' -55.5 NC_002512.2 + 206707 0.7 0.853253
Target:  5'- cCGUCGucGCCCCGGUcCGUUUCaCCGg -3'
miRNA:   3'- uGUAGCu-CGGGGUCAuGUAGAG-GGCg -5'
8978 5' -55.5 NC_002512.2 + 73983 0.7 0.853253
Target:  5'- cGCGUCG-GCgCCGGacuCGUC-CCCGCg -3'
miRNA:   3'- -UGUAGCuCGgGGUCau-GUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 227173 0.69 0.860801
Target:  5'- gGCAggaCGAGCagCCGGgggagcgGCAggcgCUCCCGCg -3'
miRNA:   3'- -UGUa--GCUCGg-GGUCa------UGUa---GAGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 154251 0.69 0.860801
Target:  5'- cGCG-CGAGCgCCCGcGUGCG-CgugCCCGCg -3'
miRNA:   3'- -UGUaGCUCG-GGGU-CAUGUaGa--GGGCG- -5'
8978 5' -55.5 NC_002512.2 + 161858 0.69 0.860801
Target:  5'- gGCGUCGgcGGUCCUcccgggucGGUGCGUCUCgUCGCu -3'
miRNA:   3'- -UGUAGC--UCGGGG--------UCAUGUAGAG-GGCG- -5'
8978 5' -55.5 NC_002512.2 + 118527 0.69 0.868153
Target:  5'- --cUCGAGCCCCGGguCGUC-CUCGUg -3'
miRNA:   3'- uguAGCUCGGGGUCauGUAGaGGGCG- -5'
8978 5' -55.5 NC_002512.2 + 58742 0.69 0.868153
Target:  5'- gGCGUCGcGCgCUCAGUcggacACGUCUCgCCGUu -3'
miRNA:   3'- -UGUAGCuCG-GGGUCA-----UGUAGAG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.