Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8978 | 5' | -55.5 | NC_002512.2 | + | 145532 | 0.66 | 0.969408 |
Target: 5'- cGCGUCGGGCC--GGaGCA--UCCCGCu -3' miRNA: 3'- -UGUAGCUCGGggUCaUGUagAGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 184245 | 0.67 | 0.953934 |
Target: 5'- -gGUCGGGCCUCcccucGUacgucaagcugucggGCGUCUCCgGCa -3' miRNA: 3'- ugUAGCUCGGGGu----CA---------------UGUAGAGGgCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 202259 | 0.67 | 0.952377 |
Target: 5'- cGCcUCGcG-CCCGGaGCGUCUCuCCGCg -3' miRNA: 3'- -UGuAGCuCgGGGUCaUGUAGAG-GGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 197417 | 1.12 | 0.003163 |
Target: 5'- gACAUCGAGCCCCAGUACAUCUCCCGCa -3' miRNA: 3'- -UGUAGCUCGGGGUCAUGUAGAGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 116711 | 0.66 | 0.966413 |
Target: 5'- aACAaCGcAGCCCCGGcACGUCcgacguggCCCGg -3' miRNA: 3'- -UGUaGC-UCGGGGUCaUGUAGa-------GGGCg -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 203492 | 0.66 | 0.966413 |
Target: 5'- uGCGUCGccAGCaCCAGgaaguuCAUCggCCCGCc -3' miRNA: 3'- -UGUAGC--UCGgGGUCau----GUAGa-GGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 167128 | 0.66 | 0.963218 |
Target: 5'- gACGUCGAGUUCCuGGUcuccgaggucgGCGUgC-CCCGCg -3' miRNA: 3'- -UGUAGCUCGGGG-UCA-----------UGUA-GaGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 49891 | 0.66 | 0.963218 |
Target: 5'- aGCAUaaGGGCUCCGccuuccucuguGUACAUCUCgUCGCa -3' miRNA: 3'- -UGUAg-CUCGGGGU-----------CAUGUAGAG-GGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 87841 | 0.66 | 0.959816 |
Target: 5'- gGCGUCGGGCCCUcgcGGcGgGUCgCCgGCc -3' miRNA: 3'- -UGUAGCUCGGGG---UCaUgUAGaGGgCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 149031 | 0.66 | 0.955078 |
Target: 5'- gACAcCGAGCCCCGcGUcccgaggcucgccuACGgggCCCGCu -3' miRNA: 3'- -UGUaGCUCGGGGU-CA--------------UGUagaGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 121623 | 0.66 | 0.958397 |
Target: 5'- gAUGUCGAGCuCCCcGUGCGgccucaccaagaUCCUGCu -3' miRNA: 3'- -UGUAGCUCG-GGGuCAUGUag----------AGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 163496 | 0.66 | 0.963218 |
Target: 5'- uACA-CGcAGCUCCAGUucaccuacgACAUCcUCCGCg -3' miRNA: 3'- -UGUaGC-UCGGGGUCA---------UGUAGaGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 181312 | 0.66 | 0.969408 |
Target: 5'- gACAcCaGGCUCCGGUACAgCUCCaGCc -3' miRNA: 3'- -UGUaGcUCGGGGUCAUGUaGAGGgCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 171740 | 0.66 | 0.956204 |
Target: 5'- gACGUCGAGCUCgGGgcccuCGccCUCUCGCc -3' miRNA: 3'- -UGUAGCUCGGGgUCau---GUa-GAGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 222864 | 0.66 | 0.966413 |
Target: 5'- aACGaCGAGCCCggcaAGgcccUGCGgcUCUCCUGCg -3' miRNA: 3'- -UGUaGCUCGGGg---UC----AUGU--AGAGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 214174 | 0.66 | 0.963218 |
Target: 5'- uACGUCGAGCCCgucauCGUCgcggaggaggaCCCGCu -3' miRNA: 3'- -UGUAGCUCGGGgucauGUAGa----------GGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 170729 | 0.66 | 0.956204 |
Target: 5'- gGCA-CGGGUuccaggCCCGGUACAUCgacaUCCuCGCc -3' miRNA: 3'- -UGUaGCUCG------GGGUCAUGUAG----AGG-GCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 218362 | 0.67 | 0.952377 |
Target: 5'- -gGUCGA-UCCCGuucUGCAUCUCCCGg -3' miRNA: 3'- ugUAGCUcGGGGUc--AUGUAGAGGGCg -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 211776 | 0.66 | 0.966413 |
Target: 5'- gACGUgGAGgCCCGGgugGCcgCgggggccgUCCCGCc -3' miRNA: 3'- -UGUAgCUCgGGGUCa--UGuaG--------AGGGCG- -5' |
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8978 | 5' | -55.5 | NC_002512.2 | + | 98359 | 0.66 | 0.963218 |
Target: 5'- cCGUUGGcGUCCUucacgGCGUCUCCCGUc -3' miRNA: 3'- uGUAGCU-CGGGGuca--UGUAGAGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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