Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8980 | 3' | -58 | NC_002512.2 | + | 196848 | 1.08 | 0.003943 |
Target: 5'- gGAUGGACGCCGUCUACGACCUGCCCGu -3' miRNA: 3'- -CUACCUGCGGCAGAUGCUGGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31566 | 0.77 | 0.353631 |
Target: 5'- -cUGGACGCCGUgaACGGCCUGaUCCu -3' miRNA: 3'- cuACCUGCGGCAgaUGCUGGAC-GGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 99485 | 0.76 | 0.407987 |
Target: 5'- -cUGGGgcuccucCGUCGUCUcCGGCCUGCCCGu -3' miRNA: 3'- cuACCU-------GCGGCAGAuGCUGGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 40359 | 0.76 | 0.417124 |
Target: 5'- --cGGACGCCGaCcGCGGCgaGCCCGg -3' miRNA: 3'- cuaCCUGCGGCaGaUGCUGgaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 102054 | 0.76 | 0.417124 |
Target: 5'- --cGGACGCCGcCgACGACCU-CCCGg -3' miRNA: 3'- cuaCCUGCGGCaGaUGCUGGAcGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 205611 | 0.74 | 0.496241 |
Target: 5'- cGcgGGAUGCCGUCgccgcCGuccuuCCUGCCCGc -3' miRNA: 3'- -CuaCCUGCGGCAGau---GCu----GGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 98015 | 0.74 | 0.520359 |
Target: 5'- -cUGGugGCCGUCcugauccgccgcgGCGucaucucuaGCCUGCCCGg -3' miRNA: 3'- cuACCugCGGCAGa------------UGC---------UGGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 30425 | 0.74 | 0.524111 |
Target: 5'- --cGGGCGUCGUCgcgGCccugaacgcgGGCCUGCCCa -3' miRNA: 3'- cuaCCUGCGGCAGa--UG----------CUGGACGGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 6691 | 0.73 | 0.543019 |
Target: 5'- --gGGACGCCGUCcccgucggGCGGCCcGUCCa -3' miRNA: 3'- cuaCCUGCGGCAGa-------UGCUGGaCGGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 100888 | 0.73 | 0.552557 |
Target: 5'- --cGGAUGCCGUCgGCGAguCCggugaagGCCCGg -3' miRNA: 3'- cuaCCUGCGGCAGaUGCU--GGa------CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 126409 | 0.73 | 0.552557 |
Target: 5'- --cGGGCGCCGUCgACGccGCCUcuccuccucccGCCCGg -3' miRNA: 3'- cuaCCUGCGGCAGaUGC--UGGA-----------CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 211150 | 0.73 | 0.571779 |
Target: 5'- -cUGGGCGUCaUCcaggGCGugCUGCCCGa -3' miRNA: 3'- cuACCUGCGGcAGa---UGCugGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 121282 | 0.73 | 0.571779 |
Target: 5'- --cGGACGCgGUCgaacuUGCGACCgcucuccGCCCGg -3' miRNA: 3'- cuaCCUGCGgCAG-----AUGCUGGa------CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31258 | 0.72 | 0.600888 |
Target: 5'- uGAUGGACGCggaCGUgUACGugU-GCCCGg -3' miRNA: 3'- -CUACCUGCG---GCAgAUGCugGaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 210105 | 0.72 | 0.620409 |
Target: 5'- aGUGcGACGUCGagUACGcCCUGCCCu -3' miRNA: 3'- cUAC-CUGCGGCagAUGCuGGACGGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 205645 | 0.72 | 0.630185 |
Target: 5'- cGggGGACGCCGUCgGCGg---GCCCGa -3' miRNA: 3'- -CuaCCUGCGGCAGaUGCuggaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 222498 | 0.72 | 0.630185 |
Target: 5'- cGGUGGcCGCCuUCUGCG-CCUGgCCGc -3' miRNA: 3'- -CUACCuGCGGcAGAUGCuGGACgGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 30766 | 0.72 | 0.639962 |
Target: 5'- --aGGACGCUGU--ACGACCUGCUg- -3' miRNA: 3'- cuaCCUGCGGCAgaUGCUGGACGGgc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 77157 | 0.71 | 0.649734 |
Target: 5'- --cGGaACGCC-UCUGCGuguccCCUGCCCGc -3' miRNA: 3'- cuaCC-UGCGGcAGAUGCu----GGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 197672 | 0.71 | 0.659493 |
Target: 5'- aGGUGGACGCCcuccUCaACGgacacccgcccuGCCUGCCCa -3' miRNA: 3'- -CUACCUGCGGc---AGaUGC------------UGGACGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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