Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8980 | 3' | -58 | NC_002512.2 | + | 16661 | 0.66 | 0.919696 |
Target: 5'- ---cGGCGCCGUUgGCGGCCacGaCCCGg -3' miRNA: 3'- cuacCUGCGGCAGaUGCUGGa-C-GGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 29950 | 0.66 | 0.92497 |
Target: 5'- -cUGGACaGCCGgugagCgGCGGCCgGCCgCGa -3' miRNA: 3'- cuACCUG-CGGCa----GaUGCUGGaCGG-GC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 130127 | 0.66 | 0.914204 |
Target: 5'- -cUGGAgGCCcggggugguGUC-GCGGCCgcgggGCCCGg -3' miRNA: 3'- cuACCUgCGG---------CAGaUGCUGGa----CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 134873 | 0.66 | 0.914204 |
Target: 5'- --gGcGACGCCGUCgGgGACCuggacUGCUCGg -3' miRNA: 3'- cuaC-CUGCGGCAGaUgCUGG-----ACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 107873 | 0.66 | 0.914204 |
Target: 5'- cGUGGAgGCCGUCgucaccuUGGCC-GCCgCGa -3' miRNA: 3'- cUACCUgCGGCAGau-----GCUGGaCGG-GC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 123110 | 0.66 | 0.914204 |
Target: 5'- --cGGAaccgucccgcCGCCGUCgGCGGCC-GuCCCGg -3' miRNA: 3'- cuaCCU----------GCGGCAGaUGCUGGaC-GGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 132102 | 0.66 | 0.92497 |
Target: 5'- --cGGAucuCGuCCGUCU-CGGCCggcagcGCCCGg -3' miRNA: 3'- cuaCCU---GC-GGCAGAuGCUGGa-----CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 29170 | 0.66 | 0.919696 |
Target: 5'- --cGGAcCGCCGg--GCGGCa-GCCCGa -3' miRNA: 3'- cuaCCU-GCGGCagaUGCUGgaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 101589 | 0.66 | 0.919696 |
Target: 5'- --aGGGucccCGCgGUCgugcggGCGGCCgucgGCCCGg -3' miRNA: 3'- cuaCCU----GCGgCAGa-----UGCUGGa---CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 141145 | 0.66 | 0.919696 |
Target: 5'- --aGGACGCCGugcagaUCUacACGACCUuCCgCGa -3' miRNA: 3'- cuaCCUGCGGC------AGA--UGCUGGAcGG-GC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31718 | 0.66 | 0.908496 |
Target: 5'- cGUGGAggucCGCCGgccggCgcCGACCcgGCCCGc -3' miRNA: 3'- cUACCU----GCGGCa----GauGCUGGa-CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 123827 | 0.66 | 0.914204 |
Target: 5'- ---aGGCGCUGUCgcACGAUCUgcGCCCGc -3' miRNA: 3'- cuacCUGCGGCAGa-UGCUGGA--CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 117965 | 0.66 | 0.896436 |
Target: 5'- cGUGGACGCucccCGcCUGgcCGugCUGCUCGg -3' miRNA: 3'- cUACCUGCG----GCaGAU--GCugGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 124049 | 0.66 | 0.896436 |
Target: 5'- uGAUcGACGgcacccUCGUCUGgGcCCUGCCCGg -3' miRNA: 3'- -CUAcCUGC------GGCAGAUgCuGGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 3157 | 0.66 | 0.908496 |
Target: 5'- --cGGuccCGCCGUCgucgcccGCGGCCU-CCCGu -3' miRNA: 3'- cuaCCu--GCGGCAGa------UGCUGGAcGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 3193 | 0.66 | 0.896436 |
Target: 5'- ---cGACGCCGcCgcggGCGACg-GCCCGg -3' miRNA: 3'- cuacCUGCGGCaGa---UGCUGgaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 115936 | 0.66 | 0.902572 |
Target: 5'- ----cACGCaCGUCUuccGCGGCCUGCUCu -3' miRNA: 3'- cuaccUGCG-GCAGA---UGCUGGACGGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31136 | 0.66 | 0.908496 |
Target: 5'- --cGaGACgaagGCCGUCUucGCgGACCUGgCCCGg -3' miRNA: 3'- cuaC-CUG----CGGCAGA--UG-CUGGAC-GGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 88885 | 0.66 | 0.902572 |
Target: 5'- --cGGuCGCCGUCcuucGCGAUCgcgGUCCGu -3' miRNA: 3'- cuaCCuGCGGCAGa---UGCUGGa--CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 99333 | 0.66 | 0.92497 |
Target: 5'- -cUGuACGUCGUCUcggACcGCCUGUCCGg -3' miRNA: 3'- cuACcUGCGGCAGA---UGcUGGACGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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