miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 3' -58 NC_002512.2 + 32732 0.69 0.790488
Target:  5'- gGGUGGAagacgGCCGUg-GCGACCUuguaGCCCa -3'
miRNA:   3'- -CUACCUg----CGGCAgaUGCUGGA----CGGGc -5'
8980 3' -58 NC_002512.2 + 102131 0.71 0.698254
Target:  5'- aGggGGACccugGCCGUCUACGGCCgcgaCCGc -3'
miRNA:   3'- -CuaCCUG----CGGCAGAUGCUGGacg-GGC- -5'
8980 3' -58 NC_002512.2 + 121384 0.71 0.698254
Target:  5'- --cGGGCGCCGggccCGGCCUcGCCCu -3'
miRNA:   3'- cuaCCUGCGGCagauGCUGGA-CGGGc -5'
8980 3' -58 NC_002512.2 + 126949 0.7 0.707837
Target:  5'- --cGGACuCCGUCgccuguUACGACCUgggGCCCGu -3'
miRNA:   3'- cuaCCUGcGGCAG------AUGCUGGA---CGGGC- -5'
8980 3' -58 NC_002512.2 + 19916 0.7 0.736203
Target:  5'- --gGGAaGCCGUUgGCGACCUugaggacccgcGCCCGg -3'
miRNA:   3'- cuaCCUgCGGCAGaUGCUGGA-----------CGGGC- -5'
8980 3' -58 NC_002512.2 + 23764 0.7 0.736203
Target:  5'- --cGGACGCCccgCUGCG-CCUGaCCCu -3'
miRNA:   3'- cuaCCUGCGGca-GAUGCuGGAC-GGGc -5'
8980 3' -58 NC_002512.2 + 127130 0.7 0.745504
Target:  5'- cGAUGu-CGCCGUC-ACGGCCUacaGUCCGa -3'
miRNA:   3'- -CUACcuGCGGCAGaUGCUGGA---CGGGC- -5'
8980 3' -58 NC_002512.2 + 49742 0.69 0.772831
Target:  5'- --cGGAgGCCGUCcugGACC-GCCCGa -3'
miRNA:   3'- cuaCCUgCGGCAGaugCUGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 54093 0.69 0.781721
Target:  5'- --gGGACGCCGccaagCUGuCGGCCUGCgaCGu -3'
miRNA:   3'- cuaCCUGCGGCa----GAU-GCUGGACGg-GC- -5'
8980 3' -58 NC_002512.2 + 139198 0.71 0.669233
Target:  5'- ---cGACGCCGUCgAgGACCUgGCCCu -3'
miRNA:   3'- cuacCUGCGGCAGaUgCUGGA-CGGGc -5'
8980 3' -58 NC_002512.2 + 77157 0.71 0.649734
Target:  5'- --cGGaACGCC-UCUGCGuguccCCUGCCCGc -3'
miRNA:   3'- cuaCC-UGCGGcAGAUGCu----GGACGGGC- -5'
8980 3' -58 NC_002512.2 + 30766 0.72 0.639962
Target:  5'- --aGGACGCUGU--ACGACCUGCUg- -3'
miRNA:   3'- cuaCCUGCGGCAgaUGCUGGACGGgc -5'
8980 3' -58 NC_002512.2 + 99485 0.76 0.407987
Target:  5'- -cUGGGgcuccucCGUCGUCUcCGGCCUGCCCGu -3'
miRNA:   3'- cuACCU-------GCGGCAGAuGCUGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 40359 0.76 0.417124
Target:  5'- --cGGACGCCGaCcGCGGCgaGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCaGaUGCUGgaCGGGC- -5'
8980 3' -58 NC_002512.2 + 102054 0.76 0.417124
Target:  5'- --cGGACGCCGcCgACGACCU-CCCGg -3'
miRNA:   3'- cuaCCUGCGGCaGaUGCUGGAcGGGC- -5'
8980 3' -58 NC_002512.2 + 98015 0.74 0.520359
Target:  5'- -cUGGugGCCGUCcugauccgccgcgGCGucaucucuaGCCUGCCCGg -3'
miRNA:   3'- cuACCugCGGCAGa------------UGC---------UGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 30425 0.74 0.524111
Target:  5'- --cGGGCGUCGUCgcgGCccugaacgcgGGCCUGCCCa -3'
miRNA:   3'- cuaCCUGCGGCAGa--UG----------CUGGACGGGc -5'
8980 3' -58 NC_002512.2 + 6691 0.73 0.543019
Target:  5'- --gGGACGCCGUCcccgucggGCGGCCcGUCCa -3'
miRNA:   3'- cuaCCUGCGGCAGa-------UGCUGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 121282 0.73 0.571779
Target:  5'- --cGGACGCgGUCgaacuUGCGACCgcucuccGCCCGg -3'
miRNA:   3'- cuaCCUGCGgCAG-----AUGCUGGa------CGGGC- -5'
8980 3' -58 NC_002512.2 + 31258 0.72 0.600888
Target:  5'- uGAUGGACGCggaCGUgUACGugU-GCCCGg -3'
miRNA:   3'- -CUACCUGCG---GCAgAUGCugGaCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.