miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 3' -58 NC_002512.2 + 196848 1.08 0.003943
Target:  5'- gGAUGGACGCCGUCUACGACCUGCCCGu -3'
miRNA:   3'- -CUACCUGCGGCAGAUGCUGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 31566 0.77 0.353631
Target:  5'- -cUGGACGCCGUgaACGGCCUGaUCCu -3'
miRNA:   3'- cuACCUGCGGCAgaUGCUGGAC-GGGc -5'
8980 3' -58 NC_002512.2 + 99485 0.76 0.407987
Target:  5'- -cUGGGgcuccucCGUCGUCUcCGGCCUGCCCGu -3'
miRNA:   3'- cuACCU-------GCGGCAGAuGCUGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 40359 0.76 0.417124
Target:  5'- --cGGACGCCGaCcGCGGCgaGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCaGaUGCUGgaCGGGC- -5'
8980 3' -58 NC_002512.2 + 102054 0.76 0.417124
Target:  5'- --cGGACGCCGcCgACGACCU-CCCGg -3'
miRNA:   3'- cuaCCUGCGGCaGaUGCUGGAcGGGC- -5'
8980 3' -58 NC_002512.2 + 205611 0.74 0.496241
Target:  5'- cGcgGGAUGCCGUCgccgcCGuccuuCCUGCCCGc -3'
miRNA:   3'- -CuaCCUGCGGCAGau---GCu----GGACGGGC- -5'
8980 3' -58 NC_002512.2 + 98015 0.74 0.520359
Target:  5'- -cUGGugGCCGUCcugauccgccgcgGCGucaucucuaGCCUGCCCGg -3'
miRNA:   3'- cuACCugCGGCAGa------------UGC---------UGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 30425 0.74 0.524111
Target:  5'- --cGGGCGUCGUCgcgGCccugaacgcgGGCCUGCCCa -3'
miRNA:   3'- cuaCCUGCGGCAGa--UG----------CUGGACGGGc -5'
8980 3' -58 NC_002512.2 + 6691 0.73 0.543019
Target:  5'- --gGGACGCCGUCcccgucggGCGGCCcGUCCa -3'
miRNA:   3'- cuaCCUGCGGCAGa-------UGCUGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 100888 0.73 0.552557
Target:  5'- --cGGAUGCCGUCgGCGAguCCggugaagGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCAGaUGCU--GGa------CGGGC- -5'
8980 3' -58 NC_002512.2 + 126409 0.73 0.552557
Target:  5'- --cGGGCGCCGUCgACGccGCCUcuccuccucccGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCAGaUGC--UGGA-----------CGGGC- -5'
8980 3' -58 NC_002512.2 + 211150 0.73 0.571779
Target:  5'- -cUGGGCGUCaUCcaggGCGugCUGCCCGa -3'
miRNA:   3'- cuACCUGCGGcAGa---UGCugGACGGGC- -5'
8980 3' -58 NC_002512.2 + 121282 0.73 0.571779
Target:  5'- --cGGACGCgGUCgaacuUGCGACCgcucuccGCCCGg -3'
miRNA:   3'- cuaCCUGCGgCAG-----AUGCUGGa------CGGGC- -5'
8980 3' -58 NC_002512.2 + 31258 0.72 0.600888
Target:  5'- uGAUGGACGCggaCGUgUACGugU-GCCCGg -3'
miRNA:   3'- -CUACCUGCG---GCAgAUGCugGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 210105 0.72 0.620409
Target:  5'- aGUGcGACGUCGagUACGcCCUGCCCu -3'
miRNA:   3'- cUAC-CUGCGGCagAUGCuGGACGGGc -5'
8980 3' -58 NC_002512.2 + 205645 0.72 0.630185
Target:  5'- cGggGGACGCCGUCgGCGg---GCCCGa -3'
miRNA:   3'- -CuaCCUGCGGCAGaUGCuggaCGGGC- -5'
8980 3' -58 NC_002512.2 + 222498 0.72 0.630185
Target:  5'- cGGUGGcCGCCuUCUGCG-CCUGgCCGc -3'
miRNA:   3'- -CUACCuGCGGcAGAUGCuGGACgGGC- -5'
8980 3' -58 NC_002512.2 + 30766 0.72 0.639962
Target:  5'- --aGGACGCUGU--ACGACCUGCUg- -3'
miRNA:   3'- cuaCCUGCGGCAgaUGCUGGACGGgc -5'
8980 3' -58 NC_002512.2 + 77157 0.71 0.649734
Target:  5'- --cGGaACGCC-UCUGCGuguccCCUGCCCGc -3'
miRNA:   3'- cuaCC-UGCGGcAGAUGCu----GGACGGGC- -5'
8980 3' -58 NC_002512.2 + 197672 0.71 0.659493
Target:  5'- aGGUGGACGCCcuccUCaACGgacacccgcccuGCCUGCCCa -3'
miRNA:   3'- -CUACCUGCGGc---AGaUGC------------UGGACGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.