miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 3' -58 NC_002512.2 + 3157 0.66 0.908496
Target:  5'- --cGGuccCGCCGUCgucgcccGCGGCCU-CCCGu -3'
miRNA:   3'- cuaCCu--GCGGCAGa------UGCUGGAcGGGC- -5'
8980 3' -58 NC_002512.2 + 3193 0.66 0.896436
Target:  5'- ---cGACGCCGcCgcggGCGACg-GCCCGg -3'
miRNA:   3'- cuacCUGCGGCaGa---UGCUGgaCGGGC- -5'
8980 3' -58 NC_002512.2 + 6691 0.73 0.543019
Target:  5'- --gGGACGCCGUCcccgucggGCGGCCcGUCCa -3'
miRNA:   3'- cuaCCUGCGGCAGa-------UGCUGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 15558 0.68 0.81598
Target:  5'- --aGGAgGCCGgagucguCGGCCUGCUCGu -3'
miRNA:   3'- cuaCCUgCGGCagau---GCUGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 16661 0.66 0.919696
Target:  5'- ---cGGCGCCGUUgGCGGCCacGaCCCGg -3'
miRNA:   3'- cuacCUGCGGCAGaUGCUGGa-C-GGGC- -5'
8980 3' -58 NC_002512.2 + 17431 0.67 0.883536
Target:  5'- --cGGAUGCCcuccucgcggcgGUC-GCGGCCggccgGCCCGa -3'
miRNA:   3'- cuaCCUGCGG------------CAGaUGCUGGa----CGGGC- -5'
8980 3' -58 NC_002512.2 + 19916 0.7 0.736203
Target:  5'- --gGGAaGCCGUUgGCGACCUugaggacccgcGCCCGg -3'
miRNA:   3'- cuaCCUgCGGCAGaUGCUGGA-----------CGGGC- -5'
8980 3' -58 NC_002512.2 + 23764 0.7 0.736203
Target:  5'- --cGGACGCCccgCUGCG-CCUGaCCCu -3'
miRNA:   3'- cuaCCUGCGGca-GAUGCuGGAC-GGGc -5'
8980 3' -58 NC_002512.2 + 26005 0.67 0.883536
Target:  5'- cGAUGGgguuuaucgGCGacaCGUCUGgaaACCUGCCCGa -3'
miRNA:   3'- -CUACC---------UGCg--GCAGAUgc-UGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 29170 0.66 0.919696
Target:  5'- --cGGAcCGCCGg--GCGGCa-GCCCGa -3'
miRNA:   3'- cuaCCU-GCGGCagaUGCUGgaCGGGC- -5'
8980 3' -58 NC_002512.2 + 29402 0.68 0.827418
Target:  5'- --aGGACGCCGcccucgcacgacucCUACGACCUGUugCUGa -3'
miRNA:   3'- cuaCCUGCGGCa-------------GAUGCUGGACG--GGC- -5'
8980 3' -58 NC_002512.2 + 29950 0.66 0.92497
Target:  5'- -cUGGACaGCCGgugagCgGCGGCCgGCCgCGa -3'
miRNA:   3'- cuACCUG-CGGCa----GaUGCUGGaCGG-GC- -5'
8980 3' -58 NC_002512.2 + 30425 0.74 0.524111
Target:  5'- --cGGGCGUCGUCgcgGCccugaacgcgGGCCUGCCCa -3'
miRNA:   3'- cuaCCUGCGGCAGa--UG----------CUGGACGGGc -5'
8980 3' -58 NC_002512.2 + 30711 0.68 0.832224
Target:  5'- cAUGGAgGCCGUCgaggACcugGAUCUGCCg- -3'
miRNA:   3'- cUACCUgCGGCAGa---UG---CUGGACGGgc -5'
8980 3' -58 NC_002512.2 + 30766 0.72 0.639962
Target:  5'- --aGGACGCUGU--ACGACCUGCUg- -3'
miRNA:   3'- cuaCCUGCGGCAgaUGCUGGACGGgc -5'
8980 3' -58 NC_002512.2 + 31136 0.66 0.908496
Target:  5'- --cGaGACgaagGCCGUCUucGCgGACCUGgCCCGg -3'
miRNA:   3'- cuaC-CUG----CGGCAGA--UG-CUGGAC-GGGC- -5'
8980 3' -58 NC_002512.2 + 31258 0.72 0.600888
Target:  5'- uGAUGGACGCggaCGUgUACGugU-GCCCGg -3'
miRNA:   3'- -CUACCUGCG---GCAgAUGCugGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 31566 0.77 0.353631
Target:  5'- -cUGGACGCCGUgaACGGCCUGaUCCu -3'
miRNA:   3'- cuACCUGCGGCAgaUGCUGGAC-GGGc -5'
8980 3' -58 NC_002512.2 + 31718 0.66 0.908496
Target:  5'- cGUGGAggucCGCCGgccggCgcCGACCcgGCCCGc -3'
miRNA:   3'- cUACCU----GCGGCa----GauGCUGGa-CGGGC- -5'
8980 3' -58 NC_002512.2 + 32732 0.69 0.790488
Target:  5'- gGGUGGAagacgGCCGUg-GCGACCUuguaGCCCa -3'
miRNA:   3'- -CUACCUg----CGGCAgaUGCUGGA----CGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.