miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 3' -58 NC_002512.2 + 129670 0.66 0.92497
Target:  5'- ---cGACGCCGcCUcgACGGCgUaGCCCGa -3'
miRNA:   3'- cuacCUGCGGCaGA--UGCUGgA-CGGGC- -5'
8980 3' -58 NC_002512.2 + 211342 0.66 0.902572
Target:  5'- --cGGGCGCUGggggacgCgcGCGGCCUgaccGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCa------Ga-UGCUGGA----CGGGC- -5'
8980 3' -58 NC_002512.2 + 193180 0.66 0.898916
Target:  5'- cGAUGGuCGCCuucuucuucgaccgcGUCUuCGGCUcgccguUGCCCGg -3'
miRNA:   3'- -CUACCuGCGG---------------CAGAuGCUGG------ACGGGC- -5'
8980 3' -58 NC_002512.2 + 196848 1.08 0.003943
Target:  5'- gGAUGGACGCCGUCUACGACCUGCCCGu -3'
miRNA:   3'- -CUACCUGCGGCAGAUGCUGGACGGGC- -5'
8980 3' -58 NC_002512.2 + 213030 0.66 0.92341
Target:  5'- aGGUGcGucCGCCGgCUGCGGgggaucgagaucgcCCUGCCCa -3'
miRNA:   3'- -CUAC-Cu-GCGGCaGAUGCU--------------GGACGGGc -5'
8980 3' -58 NC_002512.2 + 201630 0.66 0.921831
Target:  5'- cGGUaGGCGCCGUCguacucgcggcgcgACGGCCccgGCCgCGg -3'
miRNA:   3'- -CUAcCUGCGGCAGa-------------UGCUGGa--CGG-GC- -5'
8980 3' -58 NC_002512.2 + 200496 0.66 0.919696
Target:  5'- --aGGGCGgCGUCcucCGACCgggGCUCGu -3'
miRNA:   3'- cuaCCUGCgGCAGau-GCUGGa--CGGGC- -5'
8980 3' -58 NC_002512.2 + 226434 0.66 0.919156
Target:  5'- cGcgGGAccuucguCGCCGUCacCGACCaGCCCc -3'
miRNA:   3'- -CuaCCU-------GCGGCAGauGCUGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 225610 0.66 0.914204
Target:  5'- -cUGGcCGUCGUCguccgguccgACGACCUGuauccCCCGa -3'
miRNA:   3'- cuACCuGCGGCAGa---------UGCUGGAC-----GGGC- -5'
8980 3' -58 NC_002512.2 + 208423 0.66 0.902572
Target:  5'- --cGGGCGCCGcUCccgGCG-CCgGCCCc -3'
miRNA:   3'- cuaCCUGCGGC-AGa--UGCuGGaCGGGc -5'
8980 3' -58 NC_002512.2 + 218626 0.66 0.908496
Target:  5'- --aGGACGCgCGUCgg-GACCcugucgcGCCCGg -3'
miRNA:   3'- cuaCCUGCG-GCAGaugCUGGa------CGGGC- -5'
8980 3' -58 NC_002512.2 + 128280 0.66 0.914204
Target:  5'- ---cGGCGCCGggccgACGGCC-GCCCGc -3'
miRNA:   3'- cuacCUGCGGCaga--UGCUGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 115728 0.66 0.92497
Target:  5'- --cGGAgGCgGcCgagACGACgCUGCCCa -3'
miRNA:   3'- cuaCCUgCGgCaGa--UGCUG-GACGGGc -5'
8980 3' -58 NC_002512.2 + 193112 0.66 0.908496
Target:  5'- ----cGCGCCGgagagCUGCGuCCgGCCCGa -3'
miRNA:   3'- cuaccUGCGGCa----GAUGCuGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 99721 0.66 0.92497
Target:  5'- ----cGCGCCGUCgcgGGCCgGCCCGc -3'
miRNA:   3'- cuaccUGCGGCAGaugCUGGaCGGGC- -5'
8980 3' -58 NC_002512.2 + 146073 0.66 0.914204
Target:  5'- --cGGACGCCG-CcGCcGCCggcgcGCCCGa -3'
miRNA:   3'- cuaCCUGCGGCaGaUGcUGGa----CGGGC- -5'
8980 3' -58 NC_002512.2 + 108690 0.66 0.908496
Target:  5'- --aGGGCGCUGU---CGGCCagcGCCCGg -3'
miRNA:   3'- cuaCCUGCGGCAgauGCUGGa--CGGGC- -5'
8980 3' -58 NC_002512.2 + 123863 0.66 0.902572
Target:  5'- --aGGACGCCGcacccccgGCGGCgCcGCCCGu -3'
miRNA:   3'- cuaCCUGCGGCaga-----UGCUG-GaCGGGC- -5'
8980 3' -58 NC_002512.2 + 209755 0.66 0.92341
Target:  5'- --cGGACaGCCGUCgcgcuccgcgucuuuCGGCaaGCCCGg -3'
miRNA:   3'- cuaCCUG-CGGCAGau-------------GCUGgaCGGGC- -5'
8980 3' -58 NC_002512.2 + 219283 0.66 0.919696
Target:  5'- --cGGACGCCG---ACG-CCgugGCCCGc -3'
miRNA:   3'- cuaCCUGCGGCagaUGCuGGa--CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.