Results 1 - 20 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8980 | 3' | -58 | NC_002512.2 | + | 3157 | 0.66 | 0.908496 |
Target: 5'- --cGGuccCGCCGUCgucgcccGCGGCCU-CCCGu -3' miRNA: 3'- cuaCCu--GCGGCAGa------UGCUGGAcGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 3193 | 0.66 | 0.896436 |
Target: 5'- ---cGACGCCGcCgcggGCGACg-GCCCGg -3' miRNA: 3'- cuacCUGCGGCaGa---UGCUGgaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 6691 | 0.73 | 0.543019 |
Target: 5'- --gGGACGCCGUCcccgucggGCGGCCcGUCCa -3' miRNA: 3'- cuaCCUGCGGCAGa-------UGCUGGaCGGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 15558 | 0.68 | 0.81598 |
Target: 5'- --aGGAgGCCGgagucguCGGCCUGCUCGu -3' miRNA: 3'- cuaCCUgCGGCagau---GCUGGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 16661 | 0.66 | 0.919696 |
Target: 5'- ---cGGCGCCGUUgGCGGCCacGaCCCGg -3' miRNA: 3'- cuacCUGCGGCAGaUGCUGGa-C-GGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 17431 | 0.67 | 0.883536 |
Target: 5'- --cGGAUGCCcuccucgcggcgGUC-GCGGCCggccgGCCCGa -3' miRNA: 3'- cuaCCUGCGG------------CAGaUGCUGGa----CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 19916 | 0.7 | 0.736203 |
Target: 5'- --gGGAaGCCGUUgGCGACCUugaggacccgcGCCCGg -3' miRNA: 3'- cuaCCUgCGGCAGaUGCUGGA-----------CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 23764 | 0.7 | 0.736203 |
Target: 5'- --cGGACGCCccgCUGCG-CCUGaCCCu -3' miRNA: 3'- cuaCCUGCGGca-GAUGCuGGAC-GGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 26005 | 0.67 | 0.883536 |
Target: 5'- cGAUGGgguuuaucgGCGacaCGUCUGgaaACCUGCCCGa -3' miRNA: 3'- -CUACC---------UGCg--GCAGAUgc-UGGACGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 29170 | 0.66 | 0.919696 |
Target: 5'- --cGGAcCGCCGg--GCGGCa-GCCCGa -3' miRNA: 3'- cuaCCU-GCGGCagaUGCUGgaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 29402 | 0.68 | 0.827418 |
Target: 5'- --aGGACGCCGcccucgcacgacucCUACGACCUGUugCUGa -3' miRNA: 3'- cuaCCUGCGGCa-------------GAUGCUGGACG--GGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 29950 | 0.66 | 0.92497 |
Target: 5'- -cUGGACaGCCGgugagCgGCGGCCgGCCgCGa -3' miRNA: 3'- cuACCUG-CGGCa----GaUGCUGGaCGG-GC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 30425 | 0.74 | 0.524111 |
Target: 5'- --cGGGCGUCGUCgcgGCccugaacgcgGGCCUGCCCa -3' miRNA: 3'- cuaCCUGCGGCAGa--UG----------CUGGACGGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 30711 | 0.68 | 0.832224 |
Target: 5'- cAUGGAgGCCGUCgaggACcugGAUCUGCCg- -3' miRNA: 3'- cUACCUgCGGCAGa---UG---CUGGACGGgc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 30766 | 0.72 | 0.639962 |
Target: 5'- --aGGACGCUGU--ACGACCUGCUg- -3' miRNA: 3'- cuaCCUGCGGCAgaUGCUGGACGGgc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31136 | 0.66 | 0.908496 |
Target: 5'- --cGaGACgaagGCCGUCUucGCgGACCUGgCCCGg -3' miRNA: 3'- cuaC-CUG----CGGCAGA--UG-CUGGAC-GGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31258 | 0.72 | 0.600888 |
Target: 5'- uGAUGGACGCggaCGUgUACGugU-GCCCGg -3' miRNA: 3'- -CUACCUGCG---GCAgAUGCugGaCGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31566 | 0.77 | 0.353631 |
Target: 5'- -cUGGACGCCGUgaACGGCCUGaUCCu -3' miRNA: 3'- cuACCUGCGGCAgaUGCUGGAC-GGGc -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 31718 | 0.66 | 0.908496 |
Target: 5'- cGUGGAggucCGCCGgccggCgcCGACCcgGCCCGc -3' miRNA: 3'- cUACCU----GCGGCa----GauGCUGGa-CGGGC- -5' |
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8980 | 3' | -58 | NC_002512.2 | + | 32732 | 0.69 | 0.790488 |
Target: 5'- gGGUGGAagacgGCCGUg-GCGACCUuguaGCCCa -3' miRNA: 3'- -CUACCUg----CGGCAgaUGCUGGA----CGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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