miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 209135 0.66 0.998504
Target:  5'- cUGCGUCGugggagACgaCGGCGAGcacgUCGUCGu -3'
miRNA:   3'- -AUGCAGU------UGgaGCUGCUCa---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 188117 0.68 0.990585
Target:  5'- cGCGUCGACUUCGAUuucaacgUCGUCGc -3'
miRNA:   3'- aUGCAGUUGGAGCUGcuca---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 161711 0.69 0.987894
Target:  5'- gACG-CGGCCggCGACGGGaUCGUCu- -3'
miRNA:   3'- aUGCaGUUGGa-GCUGCUCaAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 194475 1.08 0.016272
Target:  5'- cUACGUCAACCUCGACGAGUUCGUCGAg -3'
miRNA:   3'- -AUGCAGUUGGAGCUGCUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 213921 0.66 0.998213
Target:  5'- ---aUCGACCgCGGCGAGUgcgaCGUCGc -3'
miRNA:   3'- augcAGUUGGaGCUGCUCAa---GCAGCu -5'
8982 3' -51.3 NC_002512.2 + 95766 0.66 0.998213
Target:  5'- gACGgCcGCCUgGACGGGggCGUcCGAg -3'
miRNA:   3'- aUGCaGuUGGAgCUGCUCaaGCA-GCU- -5'
8982 3' -51.3 NC_002512.2 + 171514 0.66 0.997487
Target:  5'- -cCGUCAcCCUCGAgGA---CGUCGAg -3'
miRNA:   3'- auGCAGUuGGAGCUgCUcaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 132010 0.67 0.99653
Target:  5'- gGCGcCGgggggACCUCGGCGGcgacgUCGUCGGc -3'
miRNA:   3'- aUGCaGU-----UGGAGCUGCUca---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 148764 0.68 0.993716
Target:  5'- gUGCG-CGACUUCGACGAccuGggCGUCa- -3'
miRNA:   3'- -AUGCaGUUGGAGCUGCU---CaaGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 134143 0.68 0.990585
Target:  5'- gACGaUCAACC-CgGACGGGUaccCGUCGAc -3'
miRNA:   3'- aUGC-AGUUGGaG-CUGCUCAa--GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 100815 0.68 0.992782
Target:  5'- gGgGUCGACCUgGACGAggauGUUCaUCGGc -3'
miRNA:   3'- aUgCAGUUGGAgCUGCU----CAAGcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 88992 0.67 0.995292
Target:  5'- -uCGUCGACC-CGgagcGCGGGgaCGUCGGg -3'
miRNA:   3'- auGCAGUUGGaGC----UGCUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 219219 0.66 0.998504
Target:  5'- cGgGcCGGCCUCGGCGAG---GUCGGg -3'
miRNA:   3'- aUgCaGUUGGAGCUGCUCaagCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 100471 0.68 0.992171
Target:  5'- cGCGUUcucggucguggcccgGACCUUGGgGAGgccgcggUCGUCGAg -3'
miRNA:   3'- aUGCAG---------------UUGGAGCUgCUCa------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 207608 0.66 0.998504
Target:  5'- gGCGgCGGCUgcugcggCGGCGAGUUCcUCGGc -3'
miRNA:   3'- aUGCaGUUGGa------GCUGCUCAAGcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 124742 0.67 0.99595
Target:  5'- gAC-UCGGCCuguUCGugGAGccgUCGUCGGc -3'
miRNA:   3'- aUGcAGUUGG---AGCugCUCa--AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 156054 0.68 0.991293
Target:  5'- -uCGUCGACacggcgaggcucaUCGACGccgggcgccggcAGUUCGUCGAg -3'
miRNA:   3'- auGCAGUUGg------------AGCUGC------------UCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 156306 0.68 0.989305
Target:  5'- --aGUCGGCCgugUCGcACGGGgagcUCGUCGAg -3'
miRNA:   3'- augCAGUUGG---AGC-UGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 7402 0.66 0.998504
Target:  5'- cGCGUCGACUgcaaUGGCaacacgGAGUccaUCGUCGAa -3'
miRNA:   3'- aUGCAGUUGGa---GCUG------CUCA---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 189670 0.66 0.997876
Target:  5'- gGCGUCGGCCcuacugguacCGGCGGcccucgUCGUCGAc -3'
miRNA:   3'- aUGCAGUUGGa---------GCUGCUca----AGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.