miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 135745 0.66 0.997178
Target:  5'- gGUCUGCcuccGCcGCGUCAuccGCGUcCugGCc -3'
miRNA:   3'- gCAGACGa---CGcUGCAGU---UGUA-GugCG- -5'
8987 3' -51.8 NC_002512.2 + 222742 0.66 0.997979
Target:  5'- aCGgccagCUGCUG-GACGUCucccuCGUCugGg -3'
miRNA:   3'- -GCa----GACGACgCUGCAGuu---GUAGugCg -5'
8987 3' -51.8 NC_002512.2 + 183522 0.66 0.997979
Target:  5'- cCGUCcucgccugGCUGCGgaccgGCGUCAACcGUC-UGCa -3'
miRNA:   3'- -GCAGa-------CGACGC-----UGCAGUUG-UAGuGCG- -5'
8987 3' -51.8 NC_002512.2 + 95354 0.66 0.997037
Target:  5'- uCGcUCUGUcGCcacagcgggacgccGACGUCGACGUCgGCGUg -3'
miRNA:   3'- -GC-AGACGaCG--------------CUGCAGUUGUAG-UGCG- -5'
8987 3' -51.8 NC_002512.2 + 104842 0.66 0.997178
Target:  5'- cCGgCUGgaGCGGCGgggaggGACcUCGCGCa -3'
miRNA:   3'- -GCaGACgaCGCUGCag----UUGuAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 100224 0.66 0.996688
Target:  5'- cCGUCgag-GCGGCGUCGACGggcggCGacCGCg -3'
miRNA:   3'- -GCAGacgaCGCUGCAGUUGUa----GU--GCG- -5'
8987 3' -51.8 NC_002512.2 + 89076 0.66 0.997606
Target:  5'- gGUCUGuCUGCGGguUCcGCAuaugcgguguuUCGCGCg -3'
miRNA:   3'- gCAGAC-GACGCUgcAGuUGU-----------AGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 47779 0.66 0.996129
Target:  5'- -uUCUGC-GCGACGaucggCGACAUCcuguuCGCc -3'
miRNA:   3'- gcAGACGaCGCUGCa----GUUGUAGu----GCG- -5'
8987 3' -51.8 NC_002512.2 + 162613 0.66 0.996129
Target:  5'- -cUCUGCUuCGAUGUUAACcguugGUCACGa -3'
miRNA:   3'- gcAGACGAcGCUGCAGUUG-----UAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 127171 0.66 0.997606
Target:  5'- --aCUGCcGCGAggcCGcCAcuaACGUCACGCu -3'
miRNA:   3'- gcaGACGaCGCU---GCaGU---UGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 155378 0.66 0.997606
Target:  5'- gGUCgggGCgGCGGCGcCGGCGggcgaUCGCGg -3'
miRNA:   3'- gCAGa--CGaCGCUGCaGUUGU-----AGUGCg -5'
8987 3' -51.8 NC_002512.2 + 161419 0.66 0.996688
Target:  5'- uCGuUCUGUUGaCGGCGaUgAGUGUCACGCa -3'
miRNA:   3'- -GC-AGACGAC-GCUGC-AgUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 115915 0.66 0.996129
Target:  5'- --cCUGCUGC-ACGaUCAcuACAcCACGCa -3'
miRNA:   3'- gcaGACGACGcUGC-AGU--UGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 64899 0.66 0.995496
Target:  5'- cCGUCgGCcGCGAUGUCGAgGcCGgGCc -3'
miRNA:   3'- -GCAGaCGaCGCUGCAGUUgUaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 157951 0.66 0.996688
Target:  5'- ---aUGCUGUGACGUgGguaauuuacggACGUCGCGg -3'
miRNA:   3'- gcagACGACGCUGCAgU-----------UGUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 81112 0.66 0.996688
Target:  5'- aGUC-GCUGaCGcccagguCGUCGAaGUCGCGCa -3'
miRNA:   3'- gCAGaCGAC-GCu------GCAGUUgUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 228029 0.66 0.996688
Target:  5'- uGUCgcgaGCgccGUGAuCGUCAugAUCACGg -3'
miRNA:   3'- gCAGa---CGa--CGCU-GCAGUugUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 118210 0.66 0.997606
Target:  5'- cCGUCUGgUGCGACGg-GGCccUCGUGCu -3'
miRNA:   3'- -GCAGACgACGCUGCagUUGu-AGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 7249 0.66 0.996688
Target:  5'- cCGUCgcgGCggaGCGGCGUCcgucGGgAUCGgGCg -3'
miRNA:   3'- -GCAGa--CGa--CGCUGCAG----UUgUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 82038 0.66 0.996635
Target:  5'- gGUC-GCgccgGCGGCGgucgCGGCgggaggaGUCGCGCg -3'
miRNA:   3'- gCAGaCGa---CGCUGCa---GUUG-------UAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.