miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 37 0.67 0.991412
Target:  5'- gCGUCuUGCaaggggggggggcuuUGCGGCGUCggUcgCGgGCg -3'
miRNA:   3'- -GCAG-ACG---------------ACGCUGCAGuuGuaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 2053 0.74 0.824197
Target:  5'- -aUCgGCUGCGGCGcCAGCGggaGCGCg -3'
miRNA:   3'- gcAGaCGACGCUGCaGUUGUag-UGCG- -5'
8987 3' -51.8 NC_002512.2 + 4575 0.67 0.992069
Target:  5'- gCGUCUGggGCGGCGgaggaggCGGCGcCGCGg -3'
miRNA:   3'- -GCAGACgaCGCUGCa------GUUGUaGUGCg -5'
8987 3' -51.8 NC_002512.2 + 7249 0.66 0.996688
Target:  5'- cCGUCgcgGCggaGCGGCGUCcgucGGgAUCGgGCg -3'
miRNA:   3'- -GCAGa--CGa--CGCUGCAG----UUgUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 13524 0.68 0.985187
Target:  5'- aG-CUGCUGCGGCG-CAc---CACGCa -3'
miRNA:   3'- gCaGACGACGCUGCaGUuguaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 17494 0.68 0.986838
Target:  5'- uCGUCgGCcGCcuccucgaucucGACGUCGGCGUCgGCGUa -3'
miRNA:   3'- -GCAGaCGaCG------------CUGCAGUUGUAG-UGCG- -5'
8987 3' -51.8 NC_002512.2 + 29017 0.71 0.933198
Target:  5'- gGUggGCgGCGugGUCGACGcCAUGCg -3'
miRNA:   3'- gCAgaCGaCGCugCAGUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 33978 0.66 0.997178
Target:  5'- uGUCUGUcGCGACGggugaGGCGUggagaCugGCa -3'
miRNA:   3'- gCAGACGaCGCUGCag---UUGUA-----GugCG- -5'
8987 3' -51.8 NC_002512.2 + 40317 0.8 0.541364
Target:  5'- -aUCUGUUGCGACGUCGcCGUCGCucGCg -3'
miRNA:   3'- gcAGACGACGCUGCAGUuGUAGUG--CG- -5'
8987 3' -51.8 NC_002512.2 + 40655 0.67 0.993075
Target:  5'- aCGUCcGCgacgGCGACGgacggaucCGACGUCGaGCa -3'
miRNA:   3'- -GCAGaCGa---CGCUGCa-------GUUGUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 43472 0.71 0.933198
Target:  5'- -uUCUGCUcGCGGCGUCAcaggucuucaguGC-UCAUGCc -3'
miRNA:   3'- gcAGACGA-CGCUGCAGU------------UGuAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 45372 0.72 0.917137
Target:  5'- gCGaCUGCUGCGACGagGACG-CGgGCc -3'
miRNA:   3'- -GCaGACGACGCUGCagUUGUaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 46725 0.67 0.993976
Target:  5'- aCGUCaugGCggcgGCGGCGgggaAGCG-CGCGCa -3'
miRNA:   3'- -GCAGa--CGa---CGCUGCag--UUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 47779 0.66 0.996129
Target:  5'- -uUCUGC-GCGACGaucggCGACAUCcuguuCGCc -3'
miRNA:   3'- gcAGACGaCGCUGCa----GUUGUAGu----GCG- -5'
8987 3' -51.8 NC_002512.2 + 54249 0.68 0.988053
Target:  5'- aCGUCcgcagcggcaggGCgGCGGCGUCGGCGaccCugGCa -3'
miRNA:   3'- -GCAGa-----------CGaCGCUGCAGUUGUa--GugCG- -5'
8987 3' -51.8 NC_002512.2 + 55799 0.67 0.993976
Target:  5'- aGUCUGC-GCGGCuacCGACGUCAuCGg -3'
miRNA:   3'- gCAGACGaCGCUGca-GUUGUAGU-GCg -5'
8987 3' -51.8 NC_002512.2 + 64899 0.66 0.995496
Target:  5'- cCGUCgGCcGCGAUGUCGAgGcCGgGCc -3'
miRNA:   3'- -GCAGaCGaCGCUGCAGUUgUaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 66360 0.66 0.997606
Target:  5'- cCGUCUuaGCUgGCucCGUCAugAUCguguGCGCa -3'
miRNA:   3'- -GCAGA--CGA-CGcuGCAGUugUAG----UGCG- -5'
8987 3' -51.8 NC_002512.2 + 75613 0.67 0.992069
Target:  5'- gCGUCUGCgcacGCGcACGcgGGCA-CGCGCa -3'
miRNA:   3'- -GCAGACGa---CGC-UGCagUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 76695 0.66 0.996688
Target:  5'- uCGUCUGaugucgucgGCGGCGUCAGCGcC-CGg -3'
miRNA:   3'- -GCAGACga-------CGCUGCAGUUGUaGuGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.