miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 229441 0.67 0.991412
Target:  5'- gCGUCuUGCaaggggggggggcuuUGCGGCGUCggUcgCGgGCg -3'
miRNA:   3'- -GCAG-ACG---------------ACGCUGCAGuuGuaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 228126 0.69 0.981418
Target:  5'- aCGUCgUGCUG-GGCGcCGACGg-GCGCg -3'
miRNA:   3'- -GCAG-ACGACgCUGCaGUUGUagUGCG- -5'
8987 3' -51.8 NC_002512.2 + 228029 0.66 0.996688
Target:  5'- uGUCgcgaGCgccGUGAuCGUCAugAUCACGg -3'
miRNA:   3'- gCAGa---CGa--CGCU-GCAGUugUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 222742 0.66 0.997979
Target:  5'- aCGgccagCUGCUG-GACGUCucccuCGUCugGg -3'
miRNA:   3'- -GCa----GACGACgCUGCAGuu---GUAGugCg -5'
8987 3' -51.8 NC_002512.2 + 220840 0.7 0.95528
Target:  5'- uCGUCgacggGCUGUGucGCGUCuACGUCGucCGCg -3'
miRNA:   3'- -GCAGa----CGACGC--UGCAGuUGUAGU--GCG- -5'
8987 3' -51.8 NC_002512.2 + 220535 0.79 0.611712
Target:  5'- aGgagCUGCUGCG-CGagGGCGUCACGCc -3'
miRNA:   3'- gCa--GACGACGCuGCagUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 219021 0.7 0.963869
Target:  5'- uG-CUGCUGCGACGugcuggucuacgucgUCGGCcgCgGCGCg -3'
miRNA:   3'- gCaGACGACGCUGC---------------AGUUGuaG-UGCG- -5'
8987 3' -51.8 NC_002512.2 + 217328 0.69 0.981418
Target:  5'- gCGUCUGCaGC-ACGUacggCGGCAUCgggACGCa -3'
miRNA:   3'- -GCAGACGaCGcUGCA----GUUGUAG---UGCG- -5'
8987 3' -51.8 NC_002512.2 + 213723 0.67 0.99095
Target:  5'- aCGUCggaGCUGaCGACGUUGACcgaccggGCGCa -3'
miRNA:   3'- -GCAGa--CGAC-GCUGCAGUUGuag----UGCG- -5'
8987 3' -51.8 NC_002512.2 + 212182 0.67 0.993075
Target:  5'- cCGUCcag-GCG-CG-CAACGUCACGCu -3'
miRNA:   3'- -GCAGacgaCGCuGCaGUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 211241 0.66 0.997606
Target:  5'- aCGaCUGCgucgagGCGGcCGUCGACGcCAUGUu -3'
miRNA:   3'- -GCaGACGa-----CGCU-GCAGUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 207612 0.68 0.985187
Target:  5'- gCGgCUGCUGCGGCGgCGAguUCcucgGCGUg -3'
miRNA:   3'- -GCaGACGACGCUGCaGUUguAG----UGCG- -5'
8987 3' -51.8 NC_002512.2 + 204693 0.7 0.962525
Target:  5'- cCGUCgcgGCggacGCGACGUCGGCGacggCGgGCc -3'
miRNA:   3'- -GCAGa--CGa---CGCUGCAGUUGUa---GUgCG- -5'
8987 3' -51.8 NC_002512.2 + 204059 0.66 0.995496
Target:  5'- gGUCU-CaGCGACGUgGACGUCGuCGg -3'
miRNA:   3'- gCAGAcGaCGCUGCAgUUGUAGU-GCg -5'
8987 3' -51.8 NC_002512.2 + 201697 0.73 0.885697
Target:  5'- gCGUCUGgUGCGggaucggcggcgGCGUCGuCGUCGCGg -3'
miRNA:   3'- -GCAGACgACGC------------UGCAGUuGUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 201326 0.86 0.294979
Target:  5'- cCGUCUGCcGCGACGUCAgcguggccgACAUCGgGCg -3'
miRNA:   3'- -GCAGACGaCGCUGCAGU---------UGUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 201190 0.67 0.993976
Target:  5'- uCG-CUGCaccGCuuCGUCAGCucGUCGCGCa -3'
miRNA:   3'- -GCaGACGa--CGcuGCAGUUG--UAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 200856 0.68 0.986838
Target:  5'- gCGUCU-CUGCcgcauGGCGUCGAC--CACGCc -3'
miRNA:   3'- -GCAGAcGACG-----CUGCAGUUGuaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 200487 0.66 0.995496
Target:  5'- aGUCgUGCgaggGCGGCGUCcuccgaccggGGCucguccUCACGCu -3'
miRNA:   3'- gCAG-ACGa---CGCUGCAG----------UUGu-----AGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 198963 0.7 0.959012
Target:  5'- gGUC-GC-GUGGCGUCG-CGUCGCGUg -3'
miRNA:   3'- gCAGaCGaCGCUGCAGUuGUAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.