miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 13524 0.68 0.985187
Target:  5'- aG-CUGCUGCGGCG-CAc---CACGCa -3'
miRNA:   3'- gCaGACGACGCUGCaGUuguaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 112238 0.7 0.965822
Target:  5'- uGUCgaUGCUGuUGAUGUUcuGCGUCACGUg -3'
miRNA:   3'- gCAG--ACGAC-GCUGCAGu-UGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 142179 0.7 0.965822
Target:  5'- cCGUCU-C-GCGGCGUCuccGCGUCGcCGCg -3'
miRNA:   3'- -GCAGAcGaCGCUGCAGu--UGUAGU-GCG- -5'
8987 3' -51.8 NC_002512.2 + 114366 0.7 0.968909
Target:  5'- cCGUCUGC-GUGAagGUCAGCuUCugGUc -3'
miRNA:   3'- -GCAGACGaCGCUg-CAGUUGuAGugCG- -5'
8987 3' -51.8 NC_002512.2 + 155244 0.7 0.968909
Target:  5'- cCGUCccGCccgucGCGGCGUCGACGgcUCGCGg -3'
miRNA:   3'- -GCAGa-CGa----CGCUGCAGUUGU--AGUGCg -5'
8987 3' -51.8 NC_002512.2 + 124608 0.69 0.974479
Target:  5'- uCGUCUucgGCgucgGCGGCGUCGGCGcCugGa -3'
miRNA:   3'- -GCAGA---CGa---CGCUGCAGUUGUaGugCg -5'
8987 3' -51.8 NC_002512.2 + 114778 0.69 0.981418
Target:  5'- -cUCUGC-GCGAUGUUGGCccgcugCACGCg -3'
miRNA:   3'- gcAGACGaCGCUGCAGUUGua----GUGCG- -5'
8987 3' -51.8 NC_002512.2 + 152055 0.68 0.983384
Target:  5'- aGUCUGCcGCaccGGCGUCGAg--CACGUa -3'
miRNA:   3'- gCAGACGaCG---CUGCAGUUguaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 128328 0.68 0.983384
Target:  5'- -cUCUGCUGCGAgcuggucuCGcUCGAggguucggucucCGUCGCGCg -3'
miRNA:   3'- gcAGACGACGCU--------GC-AGUU------------GUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 122058 0.7 0.962525
Target:  5'- gCGUCggcgGCUGUGACGaCAGCGggggcugcgaCAUGCg -3'
miRNA:   3'- -GCAGa---CGACGCUGCaGUUGUa---------GUGCG- -5'
8987 3' -51.8 NC_002512.2 + 116765 0.7 0.95528
Target:  5'- gCGUCUccgaggagagGCa-CGACGUCAGCGUCGcCGCc -3'
miRNA:   3'- -GCAGA----------CGacGCUGCAGUUGUAGU-GCG- -5'
8987 3' -51.8 NC_002512.2 + 109892 0.71 0.942727
Target:  5'- uGUCccUGUccuUGCccuCGUCGGCGUCGCGCg -3'
miRNA:   3'- gCAG--ACG---ACGcu-GCAGUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 118606 0.75 0.806958
Target:  5'- gCGUCUGgCcGCggGACGUCGACAUCAaGCu -3'
miRNA:   3'- -GCAGAC-GaCG--CUGCAGUUGUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 2053 0.74 0.824197
Target:  5'- -aUCgGCUGCGGCGcCAGCGggaGCGCg -3'
miRNA:   3'- gcAGaCGACGCUGCaGUUGUag-UGCG- -5'
8987 3' -51.8 NC_002512.2 + 129106 0.73 0.890442
Target:  5'- gCGUCUGCggcgggcgguccucUGCGACuaCAGCcUCGCGCa -3'
miRNA:   3'- -GCAGACG--------------ACGCUGcaGUUGuAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 115094 0.72 0.905252
Target:  5'- uCGUCUGCcGgGACGUCGGgacgccgugcccCGUCGCGa -3'
miRNA:   3'- -GCAGACGaCgCUGCAGUU------------GUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 97202 0.72 0.911311
Target:  5'- cCGUCUGCgGCGGCGggccgggCGggACGUCgagGCGCu -3'
miRNA:   3'- -GCAGACGaCGCUGCa------GU--UGUAG---UGCG- -5'
8987 3' -51.8 NC_002512.2 + 45372 0.72 0.917137
Target:  5'- gCGaCUGCUGCGACGagGACG-CGgGCc -3'
miRNA:   3'- -GCaGACGACGCUGCagUUGUaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 29017 0.71 0.933198
Target:  5'- gGUggGCgGCGugGUCGACGcCAUGCg -3'
miRNA:   3'- gCAgaCGaCGCugCAGUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 80032 0.71 0.942727
Target:  5'- gCGUC-GCUGCuuuCGUCGucguccuCGUCGCGCg -3'
miRNA:   3'- -GCAGaCGACGcu-GCAGUu------GUAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.