miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 183522 0.66 0.997979
Target:  5'- cCGUCcucgccugGCUGCGgaccgGCGUCAACcGUC-UGCa -3'
miRNA:   3'- -GCAGa-------CGACGC-----UGCAGUUG-UAGuGCG- -5'
8987 3' -51.8 NC_002512.2 + 192598 0.66 0.996129
Target:  5'- cCG-CUGCUGCGGCG-CGcGCggCGgGCg -3'
miRNA:   3'- -GCaGACGACGCUGCaGU-UGuaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 200487 0.66 0.995496
Target:  5'- aGUCgUGCgaggGCGGCGUCcuccgaccggGGCucguccUCACGCu -3'
miRNA:   3'- gCAG-ACGa---CGCUGCAG----------UUGu-----AGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 190237 1.12 0.00766
Target:  5'- aCGUCUGCUGCGACGUCAACAUCACGCc -3'
miRNA:   3'- -GCAGACGACGCUGCAGUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 66360 0.66 0.997606
Target:  5'- cCGUCUuaGCUgGCucCGUCAugAUCguguGCGCa -3'
miRNA:   3'- -GCAGA--CGA-CGcuGCAGUugUAG----UGCG- -5'
8987 3' -51.8 NC_002512.2 + 182093 0.66 0.997606
Target:  5'- gGUCUGg-GCGAacaggaUGUCGccgauCGUCGCGCa -3'
miRNA:   3'- gCAGACgaCGCU------GCAGUu----GUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 93982 0.66 0.997606
Target:  5'- uGUC-GCUGCG-CGUCcGCGa-ACGCg -3'
miRNA:   3'- gCAGaCGACGCuGCAGuUGUagUGCG- -5'
8987 3' -51.8 NC_002512.2 + 211241 0.66 0.997606
Target:  5'- aCGaCUGCgucgagGCGGcCGUCGACGcCAUGUu -3'
miRNA:   3'- -GCaGACGa-----CGCU-GCAGUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 91878 0.66 0.997178
Target:  5'- cCGUCcgGCgcggGCGGCGgcgCGGCG-CACGg -3'
miRNA:   3'- -GCAGa-CGa---CGCUGCa--GUUGUaGUGCg -5'
8987 3' -51.8 NC_002512.2 + 175295 0.66 0.996129
Target:  5'- aCGUacucggGgUGCaGCGUCGACAUCaACGUg -3'
miRNA:   3'- -GCAga----CgACGcUGCAGUUGUAG-UGCG- -5'
8987 3' -51.8 NC_002512.2 + 122107 0.66 0.996688
Target:  5'- gGUCgGC-GCuGACGUCGGC--CGCGCu -3'
miRNA:   3'- gCAGaCGaCG-CUGCAGUUGuaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 80718 0.66 0.997312
Target:  5'- uCGUCcugUGCaugucaaaacucgacUGCGACGUCGcgguuugACGUCuCGCu -3'
miRNA:   3'- -GCAG---ACG---------------ACGCUGCAGU-------UGUAGuGCG- -5'
8987 3' -51.8 NC_002512.2 + 222742 0.66 0.997979
Target:  5'- aCGgccagCUGCUG-GACGUCucccuCGUCugGg -3'
miRNA:   3'- -GCa----GACGACgCUGCAGuu---GUAGugCg -5'
8987 3' -51.8 NC_002512.2 + 164978 0.66 0.996688
Target:  5'- gGUCUGgccCGGCcUCGACAUCGCGg -3'
miRNA:   3'- gCAGACgacGCUGcAGUUGUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 131235 0.66 0.997979
Target:  5'- gGUCggagGCcGCGGUGgccugCAGCAUCAUGUa -3'
miRNA:   3'- gCAGa---CGaCGCUGCa----GUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 170432 0.66 0.997606
Target:  5'- -uUCUGCUGCGG-GUCccGCcgCAgGCa -3'
miRNA:   3'- gcAGACGACGCUgCAGu-UGuaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 76695 0.66 0.996688
Target:  5'- uCGUCUGaugucgucgGCGGCGUCAGCGcC-CGg -3'
miRNA:   3'- -GCAGACga-------CGCUGCAGUUGUaGuGCg -5'
8987 3' -51.8 NC_002512.2 + 204059 0.66 0.995496
Target:  5'- gGUCU-CaGCGACGUgGACGUCGuCGg -3'
miRNA:   3'- gCAGAcGaCGCUGCAgUUGUAGU-GCg -5'
8987 3' -51.8 NC_002512.2 + 167171 0.66 0.997606
Target:  5'- cCGUCgaccgcgacgcGCUGCG-CGUCAAgAUCGUGUa -3'
miRNA:   3'- -GCAGa----------CGACGCuGCAGUUgUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 115106 0.66 0.997606
Target:  5'- ---gUGCaGCGG-GcCAACAUCGCGCa -3'
miRNA:   3'- gcagACGaCGCUgCaGUUGUAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.