miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 190237 1.12 0.00766
Target:  5'- aCGUCUGCUGCGACGUCAACAUCACGCc -3'
miRNA:   3'- -GCAGACGACGCUGCAGUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 201326 0.86 0.294979
Target:  5'- cCGUCUGCcGCGACGUCAgcguggccgACAUCGgGCg -3'
miRNA:   3'- -GCAGACGaCGCUGCAGU---------UGUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 40317 0.8 0.541364
Target:  5'- -aUCUGUUGCGACGUCGcCGUCGCucGCg -3'
miRNA:   3'- gcAGACGACGCUGCAGUuGUAGUG--CG- -5'
8987 3' -51.8 NC_002512.2 + 220535 0.79 0.611712
Target:  5'- aGgagCUGCUGCG-CGagGGCGUCACGCc -3'
miRNA:   3'- gCa--GACGACGCuGCagUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 129031 0.77 0.712753
Target:  5'- --cCUGCagUGCGGCGUCGcgcacuuugACGUCACGCc -3'
miRNA:   3'- gcaGACG--ACGCUGCAGU---------UGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 162622 0.75 0.779945
Target:  5'- gCGUCaUGg-GCGACGUguACAUCGCGUa -3'
miRNA:   3'- -GCAG-ACgaCGCUGCAguUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 179481 0.75 0.806958
Target:  5'- gGUCUGCUucgGCGGCGUCGucgcCAUCGuCGUc -3'
miRNA:   3'- gCAGACGA---CGCUGCAGUu---GUAGU-GCG- -5'
8987 3' -51.8 NC_002512.2 + 118606 0.75 0.806958
Target:  5'- gCGUCUGgCcGCggGACGUCGACAUCAaGCu -3'
miRNA:   3'- -GCAGAC-GaCG--CUGCAGUUGUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 2053 0.74 0.824197
Target:  5'- -aUCgGCUGCGGCGcCAGCGggaGCGCg -3'
miRNA:   3'- gcAGaCGACGCUGCaGUUGUag-UGCG- -5'
8987 3' -51.8 NC_002512.2 + 177147 0.73 0.871546
Target:  5'- gCGuUCUGCUGCaGCGUCu-CcgCGCGCu -3'
miRNA:   3'- -GC-AGACGACGcUGCAGuuGuaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 201697 0.73 0.885697
Target:  5'- gCGUCUGgUGCGggaucggcggcgGCGUCGuCGUCGCGg -3'
miRNA:   3'- -GCAGACgACGC------------UGCAGUuGUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 129106 0.73 0.890442
Target:  5'- gCGUCUGCggcgggcgguccucUGCGACuaCAGCcUCGCGCa -3'
miRNA:   3'- -GCAGACG--------------ACGCUGcaGUUGuAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 173400 0.72 0.898962
Target:  5'- cCGUCgucCUGCGGgaccucucCGUCGaucGCAUCGCGCg -3'
miRNA:   3'- -GCAGac-GACGCU--------GCAGU---UGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 115094 0.72 0.905252
Target:  5'- uCGUCUGCcGgGACGUCGGgacgccgugcccCGUCGCGa -3'
miRNA:   3'- -GCAGACGaCgCUGCAGUU------------GUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 97202 0.72 0.911311
Target:  5'- cCGUCUGCgGCGGCGggccgggCGggACGUCgagGCGCu -3'
miRNA:   3'- -GCAGACGaCGCUGCa------GU--UGUAG---UGCG- -5'
8987 3' -51.8 NC_002512.2 + 45372 0.72 0.917137
Target:  5'- gCGaCUGCUGCGACGagGACG-CGgGCc -3'
miRNA:   3'- -GCaGACGACGCUGCagUUGUaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 169032 0.71 0.932697
Target:  5'- gCGUCcGCgaGCGGCGcCGGCAUCuccucggGCGCg -3'
miRNA:   3'- -GCAGaCGa-CGCUGCaGUUGUAG-------UGCG- -5'
8987 3' -51.8 NC_002512.2 + 43472 0.71 0.933198
Target:  5'- -uUCUGCUcGCGGCGUCAcaggucuucaguGC-UCAUGCc -3'
miRNA:   3'- gcAGACGA-CGCUGCAGU------------UGuAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 29017 0.71 0.933198
Target:  5'- gGUggGCgGCGugGUCGACGcCAUGCg -3'
miRNA:   3'- gCAgaCGaCGCugCAGUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 109892 0.71 0.942727
Target:  5'- uGUCccUGUccuUGCccuCGUCGGCGUCGCGCg -3'
miRNA:   3'- gCAG--ACG---ACGcu-GCAGUUGUAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.