miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 3' -56.5 NC_002512.2 + 29253 0.66 0.959553
Target:  5'- -cGUC-CUCCGA--CGGGGaCGAgGAGg -3'
miRNA:   3'- gaCAGaGAGGCUagGCCCC-GUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 191443 0.66 0.959553
Target:  5'- aUGUUcaCUCCGc-CCGGGGCGuUGAGg -3'
miRNA:   3'- gACAGa-GAGGCuaGGCCCCGUuGCUC- -5'
8988 3' -56.5 NC_002512.2 + 153338 0.66 0.959553
Target:  5'- gCUGgg---CCGGUCCGGGuCGGCGGGu -3'
miRNA:   3'- -GACagagaGGCUAGGCCCcGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 43065 0.66 0.955971
Target:  5'- -gGcCUCgccgaggcaCCGGUcCCGGGGCGcgGCGAGc -3'
miRNA:   3'- gaCaGAGa--------GGCUA-GGCCCCGU--UGCUC- -5'
8988 3' -56.5 NC_002512.2 + 130482 0.66 0.952181
Target:  5'- -gGUCggggC-CCGAUCCGucgcagccGGGCuGCGAGg -3'
miRNA:   3'- gaCAGa---GaGGCUAGGC--------CCCGuUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 104283 0.66 0.948177
Target:  5'- -cGUCUUUCuCGcGUCCGGcGGCGG-GAGg -3'
miRNA:   3'- gaCAGAGAG-GC-UAGGCC-CCGUUgCUC- -5'
8988 3' -56.5 NC_002512.2 + 34767 0.66 0.948177
Target:  5'- -cGcCUCUCCc--CCGGGuCAACGAGg -3'
miRNA:   3'- gaCaGAGAGGcuaGGCCCcGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 91885 0.66 0.948177
Target:  5'- -cGUCugaaaguggaUCUCCGucuucUCCuGGGGCGGCGGc -3'
miRNA:   3'- gaCAG----------AGAGGCu----AGG-CCCCGUUGCUc -5'
8988 3' -56.5 NC_002512.2 + 202589 0.66 0.947765
Target:  5'- -gGUCUCUCCGAgagcgugacuguuUUCGaGGGCAgaGCGc- -3'
miRNA:   3'- gaCAGAGAGGCU-------------AGGC-CCCGU--UGCuc -5'
8988 3' -56.5 NC_002512.2 + 154772 0.66 0.939519
Target:  5'- -cGUCUCcCCGuGUCCGccaGGCGGCGAc -3'
miRNA:   3'- gaCAGAGaGGC-UAGGCc--CCGUUGCUc -5'
8988 3' -56.5 NC_002512.2 + 214574 0.67 0.934861
Target:  5'- -cGUCccCUCCcg-CCuGGGCGACGAGa -3'
miRNA:   3'- gaCAGa-GAGGcuaGGcCCCGUUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 67767 0.67 0.93486
Target:  5'- -gGUCgUCUCCGGcgCCGGGGUcguCGGu -3'
miRNA:   3'- gaCAG-AGAGGCUa-GGCCCCGuu-GCUc -5'
8988 3' -56.5 NC_002512.2 + 133844 0.67 0.931959
Target:  5'- -gGcCUCUCCGGaggacaccgaggacgUCCuGGGGCGGCucGAGg -3'
miRNA:   3'- gaCaGAGAGGCU---------------AGG-CCCCGUUG--CUC- -5'
8988 3' -56.5 NC_002512.2 + 200503 0.67 0.929981
Target:  5'- -cGUC-CUCCGA-CCGGGGCu-CGu- -3'
miRNA:   3'- gaCAGaGAGGCUaGGCCCCGuuGCuc -5'
8988 3' -56.5 NC_002512.2 + 131081 0.67 0.929981
Target:  5'- -cGUCgCUCCGGccgCCGGGGUaccugGACGuGg -3'
miRNA:   3'- gaCAGaGAGGCUa--GGCCCCG-----UUGCuC- -5'
8988 3' -56.5 NC_002512.2 + 109470 0.67 0.92488
Target:  5'- ---cCUCUUCGGUCCGGGugaGCAGggUGAGg -3'
miRNA:   3'- gacaGAGAGGCUAGGCCC---CGUU--GCUC- -5'
8988 3' -56.5 NC_002512.2 + 5493 0.67 0.92488
Target:  5'- gUGgcgCgcgUCCGcgCCGGGGUcGCGAGg -3'
miRNA:   3'- gACa--Gag-AGGCuaGGCCCCGuUGCUC- -5'
8988 3' -56.5 NC_002512.2 + 210476 0.67 0.92488
Target:  5'- uCUGUCUCUCgaggagcaGAUCCGcGaGGCGagggcccgacGCGAGc -3'
miRNA:   3'- -GACAGAGAGg-------CUAGGC-C-CCGU----------UGCUC- -5'
8988 3' -56.5 NC_002512.2 + 188557 0.67 0.919557
Target:  5'- -cGUCggaUCCGGUCguguuCGGGGaCAACGAa -3'
miRNA:   3'- gaCAGag-AGGCUAG-----GCCCC-GUUGCUc -5'
8988 3' -56.5 NC_002512.2 + 141890 0.67 0.919557
Target:  5'- -gGUCuauauaaaUCUCCGcgUCGGGGCGccgcggccccgACGGGg -3'
miRNA:   3'- gaCAG--------AGAGGCuaGGCCCCGU-----------UGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.