miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 225331 0.7 0.743413
Target:  5'- gGUCUUuUCCggaCGCGGGCGGAAuccggguauuggUGUCCGg -3'
miRNA:   3'- -CAGAGcAGG---GCGCCCGCUUU------------GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 223256 0.66 0.899339
Target:  5'- cUCgggCGUCCgCGUcgucgggGGGCGGGACG-CCGc -3'
miRNA:   3'- cAGa--GCAGG-GCG-------CCCGCUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 222926 0.67 0.867123
Target:  5'- -gCUCGgCCCGCGGGCc-AACGaccuggCCGg -3'
miRNA:   3'- caGAGCaGGGCGCCCGcuUUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 221342 0.67 0.880849
Target:  5'- -gCUCGa-CCGCGGGagaagauggaGGAGCGUCCa -3'
miRNA:   3'- caGAGCagGGCGCCCg---------CUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 220644 0.66 0.917179
Target:  5'- --gUCGUCCUGUGGcGCG-AGCG-CCa -3'
miRNA:   3'- cagAGCAGGGCGCC-CGCuUUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 220106 0.66 0.917179
Target:  5'- gGUCgaggCGUCCgugagccgccaCGCgGGGCGgcGgGUCCGg -3'
miRNA:   3'- -CAGa---GCAGG-----------GCG-CCCGCuuUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 220005 0.67 0.893784
Target:  5'- -cCUCGcCCgGCGGGuCGAGAgG-CCGc -3'
miRNA:   3'- caGAGCaGGgCGCCC-GCUUUgCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 219266 0.69 0.796655
Target:  5'- -gCUCGUCCgGCaggGGGCG-GACG-CCGa -3'
miRNA:   3'- caGAGCAGGgCG---CCCGCuUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 219038 0.67 0.893784
Target:  5'- gGUCUaCGUCgucggCCGCGGcGCGggGC-UCCc -3'
miRNA:   3'- -CAGA-GCAG-----GGCGCC-CGCuuUGcAGGc -5'
8988 5' -58.3 NC_002512.2 + 218918 0.67 0.866417
Target:  5'- -gCUCGUgCCGCugcccuggcccgaGGGCGccGGCGUCCu -3'
miRNA:   3'- caGAGCAgGGCG-------------CCCGCu-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 218606 0.69 0.770531
Target:  5'- gGUCUCG-CCCGCGGacuCGAAggacgcGCGUCgGg -3'
miRNA:   3'- -CAGAGCaGGGCGCCc--GCUU------UGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 218485 0.86 0.105753
Target:  5'- -cCUCGUCCCGCGGGuCGuccGCGUCCGa -3'
miRNA:   3'- caGAGCAGGGCGCCC-GCuu-UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 218085 0.67 0.866417
Target:  5'- ---cCGUCCCuguccguggggaaGCGGGCGucGCGcCCGg -3'
miRNA:   3'- cagaGCAGGG-------------CGCCCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 211552 0.67 0.893784
Target:  5'- uUCggcgUGUgCCGCGGgauguccccauGCGggGCGUCCc -3'
miRNA:   3'- cAGa---GCAgGGCGCC-----------CGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 208661 0.67 0.859975
Target:  5'- cGUCUcCG-CCC-CGGGCG--GCGUCCc -3'
miRNA:   3'- -CAGA-GCaGGGcGCCCGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 207679 0.67 0.859975
Target:  5'- -gCUC-UCCCGCcGGcCGAAGCGcUCCGu -3'
miRNA:   3'- caGAGcAGGGCGcCC-GCUUUGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 204809 0.76 0.39385
Target:  5'- gGUCcgCGUCCCGgGGGCGcgGCGgcUCCGu -3'
miRNA:   3'- -CAGa-GCAGGGCgCCCGCuuUGC--AGGC- -5'
8988 5' -58.3 NC_002512.2 + 204211 0.67 0.859975
Target:  5'- -cCUgCGUUCCGaCGaGGCGcAGCGUCUGg -3'
miRNA:   3'- caGA-GCAGGGC-GC-CCGCuUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 202138 0.69 0.761591
Target:  5'- gGUCUCGgccgcCgCCGCgGGGCGGGugGUCg- -3'
miRNA:   3'- -CAGAGCa----G-GGCG-CCCGCUUugCAGgc -5'
8988 5' -58.3 NC_002512.2 + 197993 0.66 0.899946
Target:  5'- cUCUCGUCUucgcgaGCGGGCGAcgGACGggggCGa -3'
miRNA:   3'- cAGAGCAGGg-----CGCCCGCU--UUGCag--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.