miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 184573 0.66 0.927606
Target:  5'- cUC-CGaCCCGCGGGCcggcagggcggcGGucCGUCCGa -3'
miRNA:   3'- cAGaGCaGGGCGCCCG------------CUuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 133392 0.67 0.880849
Target:  5'- --aUCGgugCCCGUGGGCGAcgccauGGCGcCCc -3'
miRNA:   3'- cagAGCa--GGGCGCCCGCU------UUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 113133 0.67 0.874083
Target:  5'- -cCUCGgagaCCGCGcGCGggGCG-CCGg -3'
miRNA:   3'- caGAGCag--GGCGCcCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 218485 0.86 0.105753
Target:  5'- -cCUCGUCCCGCGGGuCGuccGCGUCCGa -3'
miRNA:   3'- caGAGCAGGGCGCCC-GCuu-UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 78040 0.66 0.917179
Target:  5'- gGUCgcgUGUCCgacaCGCGGGCauucauccgaGGAACGUCgGg -3'
miRNA:   3'- -CAGa--GCAGG----GCGCCCG----------CUUUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 220644 0.66 0.917179
Target:  5'- --gUCGUCCUGUGGcGCG-AGCG-CCa -3'
miRNA:   3'- cagAGCAGGGCGCC-CGCuUUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 96133 0.66 0.917179
Target:  5'- cGUCgUCGUCgUCGCGGGCGcucuccuCGUCg- -3'
miRNA:   3'- -CAG-AGCAG-GGCGCCCGCuuu----GCAGgc -5'
8988 5' -58.3 NC_002512.2 + 220106 0.66 0.917179
Target:  5'- gGUCgaggCGUCCgugagccgccaCGCgGGGCGgcGgGUCCGg -3'
miRNA:   3'- -CAGa---GCAGG-----------GCG-CCCGCuuUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 197993 0.66 0.899946
Target:  5'- cUCUCGUCUucgcgaGCGGGCGAcgGACGggggCGa -3'
miRNA:   3'- cAGAGCAGGg-----CGCCCGCU--UUGCag--GC- -5'
8988 5' -58.3 NC_002512.2 + 211552 0.67 0.893784
Target:  5'- uUCggcgUGUgCCGCGGgauguccccauGCGggGCGUCCc -3'
miRNA:   3'- cAGa---GCAgGGCGCC-----------CGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 223256 0.66 0.899339
Target:  5'- cUCgggCGUCCgCGUcgucgggGGGCGGGACG-CCGc -3'
miRNA:   3'- cAGa--GCAGG-GCG-------CCCGCUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 104871 0.66 0.899946
Target:  5'- -cCUCGgcCCCGCGGGCGucccuGGCc-CCGa -3'
miRNA:   3'- caGAGCa-GGGCGCCCGCu----UUGcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 74641 0.66 0.927606
Target:  5'- cGUCgaCG-CCgCGaCGGGCGGGACGgCCGc -3'
miRNA:   3'- -CAGa-GCaGG-GC-GCCCGCUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 220005 0.67 0.893784
Target:  5'- -cCUCGcCCgGCGGGuCGAGAgG-CCGc -3'
miRNA:   3'- caGAGCaGGgCGCCC-GCUUUgCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 128403 0.66 0.927606
Target:  5'- cGUCUCGagCCCG-GuGGCGggGuCG-CCGg -3'
miRNA:   3'- -CAGAGCa-GGGCgC-CCGCuuU-GCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 177925 0.66 0.911645
Target:  5'- cGUCUCGUCgCuC-GGCGGcuccGCGUCCGa -3'
miRNA:   3'- -CAGAGCAGgGcGcCCGCUu---UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 219038 0.67 0.893784
Target:  5'- gGUCUaCGUCgucggCCGCGGcGCGggGC-UCCc -3'
miRNA:   3'- -CAGA-GCAG-----GGCGCC-CGCuuUGcAGGc -5'
8988 5' -58.3 NC_002512.2 + 134527 0.67 0.874083
Target:  5'- cGUCggCGUCCCGCuGuGGCGAcagAGCGagCUGg -3'
miRNA:   3'- -CAGa-GCAGGGCG-C-CCGCU---UUGCa-GGC- -5'
8988 5' -58.3 NC_002512.2 + 87659 0.66 0.922499
Target:  5'- aUCccgCGUUCCGCGaaGGCGAcGACGUCg- -3'
miRNA:   3'- cAGa--GCAGGGCGC--CCGCU-UUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 159910 0.66 0.917179
Target:  5'- cUCUUGUCCCuGCuGGgggccuuguGCGAuACGUCCc -3'
miRNA:   3'- cAGAGCAGGG-CG-CC---------CGCUuUGCAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.