miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8993 5' -53.7 NC_002512.2 + 82265 0.66 0.991354
Target:  5'- cCGUCGUCGUCGccCcCGUCGAG-GGu -3'
miRNA:   3'- uGCAGCAGCGGCucGaGUAGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 217893 0.66 0.991354
Target:  5'- gGCGgccgCGUCGUCGAGCggCGguaCGagacGGUGGc -3'
miRNA:   3'- -UGCa---GCAGCGGCUCGa-GUa--GU----UCACC- -5'
8993 5' -53.7 NC_002512.2 + 102497 0.66 0.991354
Target:  5'- gGCGUCGUuccCGCCGcgggagucgcGGC-CGUCGGG-GGu -3'
miRNA:   3'- -UGCAGCA---GCGGC----------UCGaGUAGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 156077 0.66 0.991354
Target:  5'- gACGcCGggCGCCGgcAGUUCGUCGAGg-- -3'
miRNA:   3'- -UGCaGCa-GCGGC--UCGAGUAGUUCacc -5'
8993 5' -53.7 NC_002512.2 + 109831 0.66 0.990177
Target:  5'- cACGUCGaacCGCCGGGCgUCGgggacCGGcGUGGc -3'
miRNA:   3'- -UGCAGCa--GCGGCUCG-AGUa----GUU-CACC- -5'
8993 5' -53.7 NC_002512.2 + 17310 0.66 0.990177
Target:  5'- cGCGUCGUCGCCGccGUcgUCGUCGu---- -3'
miRNA:   3'- -UGCAGCAGCGGCu-CG--AGUAGUucacc -5'
8993 5' -53.7 NC_002512.2 + 67767 0.66 0.990177
Target:  5'- -gGUCGUcuccggCGCCGGGgUCGUC-GGUGa -3'
miRNA:   3'- ugCAGCA------GCGGCUCgAGUAGuUCACc -5'
8993 5' -53.7 NC_002512.2 + 16246 0.66 0.990177
Target:  5'- uCGUCGUCGCCGucgcccgcGGCggccaagaGUCAGGgaccGGa -3'
miRNA:   3'- uGCAGCAGCGGC--------UCGag------UAGUUCa---CC- -5'
8993 5' -53.7 NC_002512.2 + 10431 0.66 0.990177
Target:  5'- cGCGUCGUCGCCGucGggCA-CGGG-GGc -3'
miRNA:   3'- -UGCAGCAGCGGCu-CgaGUaGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 121577 0.66 0.990177
Target:  5'- cGCG-CGcCGCCauggaccacaccGAGCUCAUCAAGc-- -3'
miRNA:   3'- -UGCaGCaGCGG------------CUCGAGUAGUUCacc -5'
8993 5' -53.7 NC_002512.2 + 72878 0.66 0.988879
Target:  5'- cCGUUGUCGCgGGGCUCGggcccgAAGcGGc -3'
miRNA:   3'- uGCAGCAGCGgCUCGAGUag----UUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 166454 0.66 0.988879
Target:  5'- gGCGaCGgCGCCGGGCUCG--AGGgcgGGg -3'
miRNA:   3'- -UGCaGCaGCGGCUCGAGUagUUCa--CC- -5'
8993 5' -53.7 NC_002512.2 + 166855 0.66 0.988879
Target:  5'- cACGUcCGgcgcucccugcUCGCCGAGCUCcugGUacGGUGGc -3'
miRNA:   3'- -UGCA-GC-----------AGCGGCUCGAG---UAguUCACC- -5'
8993 5' -53.7 NC_002512.2 + 156203 0.66 0.988464
Target:  5'- gACGUCGUcagCGCCGAGCuggccuucagcuacUCGUCc-GUGu -3'
miRNA:   3'- -UGCAGCA---GCGGCUCG--------------AGUAGuuCACc -5'
8993 5' -53.7 NC_002512.2 + 217171 0.66 0.98745
Target:  5'- --aUCGUCGUCGGGUUCAUCGc---- -3'
miRNA:   3'- ugcAGCAGCGGCUCGAGUAGUucacc -5'
8993 5' -53.7 NC_002512.2 + 113689 0.66 0.985884
Target:  5'- gACGUUGgCGCCGAagagCAUCuuguAGUGGg -3'
miRNA:   3'- -UGCAGCaGCGGCUcga-GUAGu---UCACC- -5'
8993 5' -53.7 NC_002512.2 + 90172 0.66 0.985884
Target:  5'- uCGUCGUgGCgGGGUUUcgCGAGaGGa -3'
miRNA:   3'- uGCAGCAgCGgCUCGAGuaGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 67644 0.66 0.985884
Target:  5'- -gGUCGUCcacggGCCcccggacgcGGGCUCgaccGUCGAGUGGu -3'
miRNA:   3'- ugCAGCAG-----CGG---------CUCGAG----UAGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 84322 0.67 0.984173
Target:  5'- cGCGUCGcgCGCCGcAGCgUCGccgcguccUCGAGcGGg -3'
miRNA:   3'- -UGCAGCa-GCGGC-UCG-AGU--------AGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 166772 0.67 0.984173
Target:  5'- uCGUCGggguggguuaUCGCCG-GCgUCAUCGaaaucaagGGUGGg -3'
miRNA:   3'- uGCAGC----------AGCGGCuCG-AGUAGU--------UCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.