miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 226669 0.65 0.992629
Target:  5'- cCGGGUccagacucucugagCGCCGGGccgUCGcCCGCggcgGCGUc -3'
miRNA:   3'- -GCCUA--------------GCGGCUCa--AGCaGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 78012 0.65 0.992531
Target:  5'- gCGGAUCGCCGg---CGcCCACgagucauccgguCGCg -3'
miRNA:   3'- -GCCUAGCGGCucaaGCaGGUGau----------GCG- -5'
8995 3' -53.8 NC_002512.2 + 145922 0.66 0.991918
Target:  5'- cCGGGcauccgcCGCCGGGacuucUUCGaCCuGCUGCGCg -3'
miRNA:   3'- -GCCUa------GCGGCUC-----AAGCaGG-UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 167523 0.66 0.991918
Target:  5'- gCGGcUCuCCGAGaugUCGUUCgaagaGCUGCGCc -3'
miRNA:   3'- -GCCuAGcGGCUCa--AGCAGG-----UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 214414 0.66 0.991918
Target:  5'- cCGGAgcgcgccgCGcCCGAGgaccgCGUCCccguCUACGUc -3'
miRNA:   3'- -GCCUa-------GC-GGCUCaa---GCAGGu---GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 148856 0.66 0.991918
Target:  5'- cCGGAaCGCCGGcugcCGccUCCGcCUGCGCa -3'
miRNA:   3'- -GCCUaGCGGCUcaa-GC--AGGU-GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 102935 0.66 0.991918
Target:  5'- gGGAgCGCCaGAGggUCGaCCGggGCGCg -3'
miRNA:   3'- gCCUaGCGG-CUCa-AGCaGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 68368 0.66 0.991918
Target:  5'- cCGGGcUCGgCG-GUgcCGUCCGCgcaGCGCa -3'
miRNA:   3'- -GCCU-AGCgGCuCAa-GCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 13279 0.66 0.991918
Target:  5'- aGGAUUGCgugGAGgaUGUCCACgcgACGa -3'
miRNA:   3'- gCCUAGCGg--CUCaaGCAGGUGa--UGCg -5'
8995 3' -53.8 NC_002512.2 + 145048 0.66 0.991918
Target:  5'- gGGAcgGCCGGGagaUCGaCCACguggACGCg -3'
miRNA:   3'- gCCUagCGGCUCa--AGCaGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 164435 0.66 0.991918
Target:  5'- -aGGUCGCCGGGaa-G-CCGCUcgGCGCc -3'
miRNA:   3'- gcCUAGCGGCUCaagCaGGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 175924 0.66 0.991918
Target:  5'- -aGGUUGUCGAGcaggGUCCuCUGCGCg -3'
miRNA:   3'- gcCUAGCGGCUCaag-CAGGuGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 22067 0.66 0.991267
Target:  5'- gGGAgaCGCCGAGUcgggguucggagagcUCGUCCggccgggagACgACGCc -3'
miRNA:   3'- gCCUa-GCGGCUCA---------------AGCAGG---------UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 104487 0.66 0.99081
Target:  5'- uGGAguuccgcUGCCGAcgccuGUUCcagggCCGCUACGCg -3'
miRNA:   3'- gCCUa------GCGGCU-----CAAGca---GGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 126476 0.66 0.99081
Target:  5'- aCGGcgucuUCGaCGAGUUCGUggccCCGgaGCGCg -3'
miRNA:   3'- -GCCu----AGCgGCUCAAGCA----GGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 90117 0.66 0.99081
Target:  5'- uGGAUCGCgGg---CGcCCGgUGCGCg -3'
miRNA:   3'- gCCUAGCGgCucaaGCaGGUgAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 93976 0.66 0.99081
Target:  5'- aGGAcgugUCGCUGcg--CGUCCGCgaACGCg -3'
miRNA:   3'- gCCU----AGCGGCucaaGCAGGUGa-UGCG- -5'
8995 3' -53.8 NC_002512.2 + 127164 0.66 0.99081
Target:  5'- cCGGGUCGaaguagggcaGGGUcCGggCCACUGCGUc -3'
miRNA:   3'- -GCCUAGCgg--------CUCAaGCa-GGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 199198 0.66 0.99081
Target:  5'- uGaGGUCGUaCGGGUugUCGUCCgACcGCGCc -3'
miRNA:   3'- gC-CUAGCG-GCUCA--AGCAGG-UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 95838 0.66 0.99009
Target:  5'- cCGGAcgcgcagguugaacaUgGCCGGGUg-GUCCGCcaccGCGCa -3'
miRNA:   3'- -GCCU---------------AgCGGCUCAagCAGGUGa---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.