miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 186485 1.13 0.005012
Target:  5'- gCGGAUCGCCGAGUUCGUCCACUACGCg -3'
miRNA:   3'- -GCCUAGCGGCUCAAGCAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 85203 0.82 0.352463
Target:  5'- uGGGUCGCCGGGUcgUCGUCCucGCU-CGCc -3'
miRNA:   3'- gCCUAGCGGCUCA--AGCAGG--UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 100345 0.75 0.722321
Target:  5'- gCGGG-CGCCGGccacgcagcacGgcgUCGUCCugUACGCg -3'
miRNA:   3'- -GCCUaGCGGCU-----------Ca--AGCAGGugAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 135237 0.74 0.750806
Target:  5'- cCGGGcCGCCucGAGgccgUCGUCCGCgccGCGCu -3'
miRNA:   3'- -GCCUaGCGG--CUCa---AGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 13380 0.74 0.769317
Target:  5'- uGG--UGCCGcGGUUCGUCCGCUaccugACGCg -3'
miRNA:   3'- gCCuaGCGGC-UCAAGCAGGUGA-----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 136189 0.74 0.777501
Target:  5'- gGGGUCGCCGGGaucgCGUCgACgccggcggccuggUGCGCg -3'
miRNA:   3'- gCCUAGCGGCUCaa--GCAGgUG-------------AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 95183 0.73 0.830047
Target:  5'- gCGGAgagCGCCcgcgaGAGgaCGUCCGCggucGCGCg -3'
miRNA:   3'- -GCCUa--GCGG-----CUCaaGCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 24481 0.73 0.821821
Target:  5'- aGGAggCGCCgGAGU---UCCGCUGCGCc -3'
miRNA:   3'- gCCUa-GCGG-CUCAagcAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 121539 0.73 0.787367
Target:  5'- cCGGcgCGCCGGGgUCGagCACgagACGCu -3'
miRNA:   3'- -GCCuaGCGGCUCaAGCagGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 4853 0.73 0.787367
Target:  5'- gCGGccAUCGCgGGGUUCG-CCGCgugcgGCGCc -3'
miRNA:   3'- -GCC--UAGCGgCUCAAGCaGGUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 157596 0.73 0.830047
Target:  5'- gGuGAUCGCCGGcgcGUUCG-CCGCcACGCc -3'
miRNA:   3'- gC-CUAGCGGCU---CAAGCaGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 181759 0.72 0.868494
Target:  5'- -uGAaCGCCGcGUUCGUCCAC-ACGUc -3'
miRNA:   3'- gcCUaGCGGCuCAAGCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 145003 0.72 0.838102
Target:  5'- aGGAg-GUCGAGcgcUUCGcCCGCUACGCc -3'
miRNA:   3'- gCCUagCGGCUC---AAGCaGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 223787 0.72 0.853677
Target:  5'- cCGGAcgUCGCCGGGgaCGUCgGCgGCGa -3'
miRNA:   3'- -GCCU--AGCGGCUCaaGCAGgUGaUGCg -5'
8995 3' -53.8 NC_002512.2 + 222568 0.72 0.861183
Target:  5'- gCGGucAUCGUCGuAGUUCGUCUACUAgauauCGUg -3'
miRNA:   3'- -GCC--UAGCGGC-UCAAGCAGGUGAU-----GCG- -5'
8995 3' -53.8 NC_002512.2 + 133907 0.72 0.845981
Target:  5'- cCGGA-CGCCGAc--CG-CCGCUGCGCc -3'
miRNA:   3'- -GCCUaGCGGCUcaaGCaGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 60882 0.71 0.889204
Target:  5'- cCGGAUCGCCGAGccggcgcgCGaCCGCU-CGg -3'
miRNA:   3'- -GCCUAGCGGCUCaa------GCaGGUGAuGCg -5'
8995 3' -53.8 NC_002512.2 + 35862 0.71 0.907995
Target:  5'- uGGAUCGCCGAcucccgGUCCAUcGCGUu -3'
miRNA:   3'- gCCUAGCGGCUcaag--CAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 173546 0.71 0.889204
Target:  5'- gGGGUUGCUGAGUUCcauGUCCAUUGucUGUc -3'
miRNA:   3'- gCCUAGCGGCUCAAG---CAGGUGAU--GCG- -5'
8995 3' -53.8 NC_002512.2 + 96448 0.71 0.888544
Target:  5'- cCGcGAUCGaucccguccgcguCCGGGUuuuUCGUCCGCgggGCGCc -3'
miRNA:   3'- -GC-CUAGC-------------GGCUCA---AGCAGGUGa--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.