miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 226669 0.65 0.992629
Target:  5'- cCGGGUccagacucucugagCGCCGGGccgUCGcCCGCggcgGCGUc -3'
miRNA:   3'- -GCCUA--------------GCGGCUCa--AGCaGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 226399 0.67 0.983374
Target:  5'- aCGG--CGCCGGGacccgucgCGUCCGCgucuccggACGCg -3'
miRNA:   3'- -GCCuaGCGGCUCaa------GCAGGUGa-------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 226098 0.68 0.969298
Target:  5'- aGGcGUCGCCGucUUCaUCUGCUGCGUc -3'
miRNA:   3'- gCC-UAGCGGCucAAGcAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 224630 0.67 0.981455
Target:  5'- gGGGUCGCCGccg-CGgCCucggcCUACGCg -3'
miRNA:   3'- gCCUAGCGGCucaaGCaGGu----GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 224416 0.67 0.979374
Target:  5'- aCGaGGUCcCCGAGUUCugcccccuUCCGCUcuACGCg -3'
miRNA:   3'- -GC-CUAGcGGCUCAAGc-------AGGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 223787 0.72 0.853677
Target:  5'- cCGGAcgUCGCCGGGgaCGUCgGCgGCGa -3'
miRNA:   3'- -GCCU--AGCGGCUCaaGCAGgUGaUGCg -5'
8995 3' -53.8 NC_002512.2 + 222673 0.68 0.972093
Target:  5'- aGGggCGCCucGAGUUCG---ACUGCGCc -3'
miRNA:   3'- gCCuaGCGG--CUCAAGCaggUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 222568 0.72 0.861183
Target:  5'- gCGGucAUCGUCGuAGUUCGUCUACUAgauauCGUg -3'
miRNA:   3'- -GCC--UAGCGGC-UCAAGCAGGUGAU-----GCG- -5'
8995 3' -53.8 NC_002512.2 + 220908 0.69 0.956126
Target:  5'- ---cUCuaCGAGUUCGUCCAgUGCGg -3'
miRNA:   3'- gccuAGcgGCUCAAGCAGGUgAUGCg -5'
8995 3' -53.8 NC_002512.2 + 214414 0.66 0.991918
Target:  5'- cCGGAgcgcgccgCGcCCGAGgaccgCGUCCccguCUACGUc -3'
miRNA:   3'- -GCCUa-------GC-GGCUCaa---GCAGGu---GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 213532 0.71 0.90195
Target:  5'- uCGGggUGCCcucGGagCGUCUGCUGCGCg -3'
miRNA:   3'- -GCCuaGCGGc--UCaaGCAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 213217 0.69 0.944028
Target:  5'- gGGAcCGCCGGG-UCGUggCCGCcaacgGCGCc -3'
miRNA:   3'- gCCUaGCGGCUCaAGCA--GGUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 212426 0.67 0.979374
Target:  5'- gCGGGagGUCGAGUUCGggccggccggCCGCgacCGCc -3'
miRNA:   3'- -GCCUagCGGCUCAAGCa---------GGUGau-GCG- -5'
8995 3' -53.8 NC_002512.2 + 211787 0.66 0.988238
Target:  5'- cCGGGUgGCCGcggGGgcCGUCCcgccGCgGCGCa -3'
miRNA:   3'- -GCCUAgCGGC---UCaaGCAGG----UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 207726 0.68 0.972093
Target:  5'- ----gCGCCGAGUccaUCGUCgGCgggggACGCu -3'
miRNA:   3'- gccuaGCGGCUCA---AGCAGgUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 204667 0.69 0.956126
Target:  5'- gGGAUCGCCGgcGGcUCGcucCCGCUccguCGCg -3'
miRNA:   3'- gCCUAGCGGC--UCaAGCa--GGUGAu---GCG- -5'
8995 3' -53.8 NC_002512.2 + 202087 0.69 0.952311
Target:  5'- aCGGggCGCCG-GUcaccUCGUCCGac-CGCg -3'
miRNA:   3'- -GCCuaGCGGCuCA----AGCAGGUgauGCG- -5'
8995 3' -53.8 NC_002512.2 + 199198 0.66 0.99081
Target:  5'- uGaGGUCGUaCGGGUugUCGUCCgACcGCGCc -3'
miRNA:   3'- gC-CUAGCG-GCUCA--AGCAGG-UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 196503 0.71 0.90195
Target:  5'- gCGGA-CGCCGGGUUCGaccgggacaggaUCCGCaa-GCa -3'
miRNA:   3'- -GCCUaGCGGCUCAAGC------------AGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 195395 0.67 0.985139
Target:  5'- cCGGGUCGaCCGGGagcUCGUCUucuCggggACGUg -3'
miRNA:   3'- -GCCUAGC-GGCUCa--AGCAGGu--Ga---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.