miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 121923 0.66 0.798905
Target:  5'- uUCGcCCuGGC-CCUGGACGCCauCGa -3'
miRNA:   3'- cAGCaGG-CCGuGGACCUGCGGacGCa -5'
8997 3' -61.3 NC_002512.2 + 176398 0.66 0.798905
Target:  5'- aUCGUCCgcgccgcgucguGGCACCUguccagcagGGugGCCaucUGCGc -3'
miRNA:   3'- cAGCAGG------------CCGUGGA---------CCugCGG---ACGCa -5'
8997 3' -61.3 NC_002512.2 + 220643 0.66 0.798905
Target:  5'- cGUCGUCCuguGGCgcgagcgccACCUGGccCGCC-GCGUc -3'
miRNA:   3'- -CAGCAGG---CCG---------UGGACCu-GCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 221825 0.66 0.790395
Target:  5'- cUCGUCuCGGCGuCCgacccgcggGGGCGCCU-CGg -3'
miRNA:   3'- cAGCAG-GCCGU-GGa--------CCUGCGGAcGCa -5'
8997 3' -61.3 NC_002512.2 + 118538 0.66 0.790395
Target:  5'- gGUCGUCCucgugcGCGCCcgGGACGCCaacaacgGCa- -3'
miRNA:   3'- -CAGCAGGc-----CGUGGa-CCUGCGGa------CGca -5'
8997 3' -61.3 NC_002512.2 + 161904 0.66 0.790395
Target:  5'- cUCGcgCCGGC-CCUccuccggcGGACGCCacgGCGa -3'
miRNA:   3'- cAGCa-GGCCGuGGA--------CCUGCGGa--CGCa -5'
8997 3' -61.3 NC_002512.2 + 148949 0.66 0.790395
Target:  5'- -cCGggaCGGCACCUaccgccgggaGGGCGCCcGCGc -3'
miRNA:   3'- caGCag-GCCGUGGA----------CCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 58669 0.66 0.787817
Target:  5'- aGUCGaaagaUCCGGCGCgUGuugaaaaccagaucGGCGCCcGCGUu -3'
miRNA:   3'- -CAGC-----AGGCCGUGgAC--------------CUGCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 217678 0.66 0.781759
Target:  5'- --gGUCCGGgCGCUUGGGCuggcucuuccccGCCgGCGUc -3'
miRNA:   3'- cagCAGGCC-GUGGACCUG------------CGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 134981 0.66 0.781759
Target:  5'- uGUCuGcCCGGCgACCgGGACGCCUaccCGUu -3'
miRNA:   3'- -CAG-CaGGCCG-UGGaCCUGCGGAc--GCA- -5'
8997 3' -61.3 NC_002512.2 + 124618 0.66 0.773004
Target:  5'- cGUCGgcggcgUCGGCGCCUGGAU-CCgggUGCGc -3'
miRNA:   3'- -CAGCa-----GGCCGUGGACCUGcGG---ACGCa -5'
8997 3' -61.3 NC_002512.2 + 57046 0.66 0.773004
Target:  5'- -gCGUCCGaCgACCgggGGGCGCCggGCGa -3'
miRNA:   3'- caGCAGGCcG-UGGa--CCUGCGGa-CGCa -5'
8997 3' -61.3 NC_002512.2 + 1298 0.66 0.773004
Target:  5'- --gGUCCGGCGCCUGc-CGCCgacacgaccGCGg -3'
miRNA:   3'- cagCAGGCCGUGGACcuGCGGa--------CGCa -5'
8997 3' -61.3 NC_002512.2 + 24445 0.66 0.764139
Target:  5'- cGUCGUCCGaacGCACggugGGGCGCCUcuuaGCa- -3'
miRNA:   3'- -CAGCAGGC---CGUGga--CCUGCGGA----CGca -5'
8997 3' -61.3 NC_002512.2 + 95017 0.66 0.763246
Target:  5'- cGUCGUCCGGgGCagggGGGCGgUcaggcugUGCGUg -3'
miRNA:   3'- -CAGCAGGCCgUGga--CCUGCgG-------ACGCA- -5'
8997 3' -61.3 NC_002512.2 + 214571 0.66 0.763246
Target:  5'- cGUCGUCCccuccCGCCUGGGCGacgagacgcucuuCCUGCa- -3'
miRNA:   3'- -CAGCAGGcc---GUGGACCUGC-------------GGACGca -5'
8997 3' -61.3 NC_002512.2 + 155559 0.66 0.755168
Target:  5'- uUCGUCuuccucuucuaCGGCACCgaGGACGuCCUGUc- -3'
miRNA:   3'- cAGCAG-----------GCCGUGGa-CCUGC-GGACGca -5'
8997 3' -61.3 NC_002512.2 + 197316 0.66 0.755168
Target:  5'- -aCGaccCCGGCACCcGcGGCGCCcgGCGg -3'
miRNA:   3'- caGCa--GGCCGUGGaC-CUGCGGa-CGCa -5'
8997 3' -61.3 NC_002512.2 + 131228 0.66 0.755168
Target:  5'- -aCGUCgCGGUcggagGCCgcGGugGCCUGCa- -3'
miRNA:   3'- caGCAG-GCCG-----UGGa-CCugCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 134098 0.66 0.754266
Target:  5'- -gCGUccCCGGCGCCUaccgcucGGACGCCcccguccagGCGg -3'
miRNA:   3'- caGCA--GGCCGUGGA-------CCUGCGGa--------CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.