miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 184709 1.08 0.010111
Target:  5'- uCGAGACCUCCGAGGACGACUUCUACGc -3'
miRNA:   3'- -GCUCUGGAGGCUCCUGCUGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 224043 0.86 0.225276
Target:  5'- aCGGGGCCgCCGGGGACGACUcgucgggcgUCUGCGa -3'
miRNA:   3'- -GCUCUGGaGGCUCCUGCUGA---------AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 130257 0.8 0.455196
Target:  5'- cCGGGcCCUCCGAGGGCGACgaCcGCGa -3'
miRNA:   3'- -GCUCuGGAGGCUCCUGCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 226004 0.8 0.455196
Target:  5'- cCGGGACgccggugcugaCUCCGAGGACGACguccgcuccgUCUACGa -3'
miRNA:   3'- -GCUCUG-----------GAGGCUCCUGCUGa---------AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 212962 0.77 0.598192
Target:  5'- aCGGcGCCUCCGGGGuCGAgaUCUGCGa -3'
miRNA:   3'- -GCUcUGGAGGCUCCuGCUgaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 128569 0.77 0.608127
Target:  5'- uCGAcGGCCUCCGGGGGcCGACc-CUGCGa -3'
miRNA:   3'- -GCU-CUGGAGGCUCCU-GCUGaaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 49462 0.77 0.638006
Target:  5'- cCGGGgcGCCgucaCCGAGGACGACUUCgacUACGc -3'
miRNA:   3'- -GCUC--UGGa---GGCUCCUGCUGAAG---AUGC- -5'
8998 5' -53.6 NC_002512.2 + 221862 0.76 0.677746
Target:  5'- cCGGGACCUCuCGgagcggguGGGGCGAgUUCUGCu -3'
miRNA:   3'- -GCUCUGGAG-GC--------UCCUGCUgAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 130664 0.76 0.677746
Target:  5'- gCGGGGCuCUCCGAGGACcggGACgggCUGCu -3'
miRNA:   3'- -GCUCUG-GAGGCUCCUG---CUGaa-GAUGc -5'
8998 5' -53.6 NC_002512.2 + 97127 0.75 0.697435
Target:  5'- gGAGACCUUCGcccgccugcGGGACGACgccgcgCUGCGc -3'
miRNA:   3'- gCUCUGGAGGC---------UCCUGCUGaa----GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 225542 0.75 0.707206
Target:  5'- gCGGGAgCgCgGAGGACGACUUCUucgGCGa -3'
miRNA:   3'- -GCUCUgGaGgCUCCUGCUGAAGA---UGC- -5'
8998 5' -53.6 NC_002512.2 + 130978 0.75 0.707206
Target:  5'- gGAGACCUCgGAGGAgGAgaUCggGCGa -3'
miRNA:   3'- gCUCUGGAGgCUCCUgCUgaAGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 201864 0.75 0.716916
Target:  5'- uGGGGCCugcggUCCGAGGACGGCg---GCGg -3'
miRNA:   3'- gCUCUGG-----AGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 11308 0.75 0.716916
Target:  5'- gGAGACCUCCGAGaGAUGGCcgaCgcgACGg -3'
miRNA:   3'- gCUCUGGAGGCUC-CUGCUGaa-Ga--UGC- -5'
8998 5' -53.6 NC_002512.2 + 138431 0.75 0.726558
Target:  5'- --uGACCUUCGAGGugGAacaCUUCUGCc -3'
miRNA:   3'- gcuCUGGAGGCUCCugCU---GAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 11476 0.75 0.745601
Target:  5'- gGAGACCg-CGAGGACGACgacgACGg -3'
miRNA:   3'- gCUCUGGagGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 183714 0.75 0.745601
Target:  5'- gGAGACCUCCGAGGAgaucCG-CUUCg--- -3'
miRNA:   3'- gCUCUGGAGGCUCCU----GCuGAAGaugc -5'
8998 5' -53.6 NC_002512.2 + 129088 0.74 0.754986
Target:  5'- --cGACC-CCGAGGACGgGCggcgUCUGCGg -3'
miRNA:   3'- gcuCUGGaGGCUCCUGC-UGa---AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 207873 0.74 0.773439
Target:  5'- gCGAG---UCCGGGGACGGCUUCUgGCGc -3'
miRNA:   3'- -GCUCuggAGGCUCCUGCUGAAGA-UGC- -5'
8998 5' -53.6 NC_002512.2 + 156836 0.74 0.773439
Target:  5'- gCGAGGCCUgCGGGGGCcGCUgCUGCc -3'
miRNA:   3'- -GCUCUGGAgGCUCCUGcUGAaGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.