Results 21 - 40 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8999 | 3' | -55.4 | NC_002512.2 | + | 199979 | 0.66 | 0.955594 |
Target: 5'- cGCcGCGUccGCGCGccCGGCGGGGAcGAGc -3' miRNA: 3'- aCGcUGCA--CGCGCu-GCCGUUCUU-CUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 112518 | 0.66 | 0.962682 |
Target: 5'- aGgGACGaguUGCuguugcagacgGCGGCgGGCAGGAAGAa -3' miRNA: 3'- aCgCUGC---ACG-----------CGCUG-CCGUUCUUCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 213077 | 0.66 | 0.965912 |
Target: 5'- cGCGggcuACGUGCucuucguCGGCGGCGAGGAcGAc -3' miRNA: 3'- aCGC----UGCACGc------GCUGCCGUUCUU-CUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 154280 | 0.66 | 0.971773 |
Target: 5'- gUGCG-CGUGCGCaGACGcGCGcGAAa-- -3' miRNA: 3'- -ACGCuGCACGCG-CUGC-CGUuCUUcuc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 162630 | 0.67 | 0.943337 |
Target: 5'- gGCGACGUGUacaucGCGuaccauCGGgAuGAGGAGg -3' miRNA: 3'- aCGCUGCACG-----CGCu-----GCCgUuCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 228266 | 0.67 | 0.951729 |
Target: 5'- gGCGAC-UGacCGCGGacCGGguGGGAGAGg -3' miRNA: 3'- aCGCUGcAC--GCGCU--GCCguUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 125136 | 0.66 | 0.962682 |
Target: 5'- gGaCGACG-GCGacgagGACGGCGAcgcGGAGAGc -3' miRNA: 3'- aC-GCUGCaCGCg----CUGCCGUU---CUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 140863 | 0.66 | 0.971773 |
Target: 5'- cGCGGCcUGCGCGAa-GUucGAAGAa -3' miRNA: 3'- aCGCUGcACGCGCUgcCGuuCUUCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 187655 | 0.67 | 0.953301 |
Target: 5'- gGCGGCG-GCcacggucacggucaCGGCGGCGGGcGGAGg -3' miRNA: 3'- aCGCUGCaCGc-------------GCUGCCGUUCuUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 155752 | 0.66 | 0.971773 |
Target: 5'- cGUGGCGUGCgGCaACGGgCugAAGGAGAu -3' miRNA: 3'- aCGCUGCACG-CGcUGCC-G--UUCUUCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 123844 | 0.66 | 0.962682 |
Target: 5'- cGUGAUcUGCGUGGCGG--AGAGGAc -3' miRNA: 3'- aCGCUGcACGCGCUGCCguUCUUCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 228774 | 0.66 | 0.955594 |
Target: 5'- gGCGACcgagacgGCGgaGACGGgaGAGGAGAGg -3' miRNA: 3'- aCGCUGca-----CGCg-CUGCCg-UUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 168101 | 0.66 | 0.965912 |
Target: 5'- gGauACGUGCGgGAgcaGGguAGGAGAGg -3' miRNA: 3'- aCgcUGCACGCgCUg--CCguUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 157030 | 0.66 | 0.965912 |
Target: 5'- gGCGACGcgGCccggaGCGAggacccCGGCAAGgcGGGc -3' miRNA: 3'- aCGCUGCa-CG-----CGCU------GCCGUUCuuCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 100063 | 0.66 | 0.971498 |
Target: 5'- cGCGACGgggGcCGCGggccggggacggaGCGGUcaggggaacaggGAGAAGGGg -3' miRNA: 3'- aCGCUGCa--C-GCGC-------------UGCCG------------UUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 123540 | 0.66 | 0.971773 |
Target: 5'- gGUGGCGagcucGCGgGACGaGCGAccGggGAGa -3' miRNA: 3'- aCGCUGCa----CGCgCUGC-CGUU--CuuCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 102489 | 0.67 | 0.943337 |
Target: 5'- gGUGGCGguccCGCaGGCGGCGGacGggGAGg -3' miRNA: 3'- aCGCUGCac--GCG-CUGCCGUU--CuuCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 153180 | 0.67 | 0.943337 |
Target: 5'- gGCGGCG-G-GCaGCGGUggGGAGGGc -3' miRNA: 3'- aCGCUGCaCgCGcUGCCGuuCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 196760 | 0.67 | 0.947644 |
Target: 5'- gGCGGCGUGUacugcuaCGACcuGCAGGAGGAc -3' miRNA: 3'- aCGCUGCACGc------GCUGc-CGUUCUUCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 102307 | 0.67 | 0.951729 |
Target: 5'- gGCGACGUcGCG-GACGGUccGucGGGc -3' miRNA: 3'- aCGCUGCA-CGCgCUGCCGuuCuuCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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