Results 1 - 20 of 520 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 110933 | 0.66 | 0.398769 |
Target: 5'- -cCCGCCGCCGCCCcacgcuccccucgaGCuCGCGGuCGa- -3' miRNA: 3'- gcGGCGGCGGCGGG--------------CG-GCGCCcGCga -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 208654 | 0.66 | 0.408606 |
Target: 5'- cCGCCcCCGUC-UCCGCCcCGGGCGg- -3' miRNA: 3'- -GCGGcGGCGGcGGGCGGcGCCCGCga -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 212998 | 0.66 | 0.408606 |
Target: 5'- uCGCCGCgGCCGUCgGgCC-CGGG-GCc -3' miRNA: 3'- -GCGGCGgCGGCGGgC-GGcGCCCgCGa -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 135842 | 0.66 | 0.401025 |
Target: 5'- cCGUCGUCGCCGaagagaUCCGCCGCGaaaccgaGCGUc -3' miRNA: 3'- -GCGGCGGCGGC------GGGCGGCGCc------CGCGa -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 128766 | 0.66 | 0.401025 |
Target: 5'- gCGCUGCgcgagCGCaCGCCgCGCCGC--GCGCUg -3' miRNA: 3'- -GCGGCG-----GCG-GCGG-GCGGCGccCGCGA- -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 117552 | 0.66 | 0.408606 |
Target: 5'- aCGCUGCUGUacagCGCCaaggCGUCGauGGCGCUg -3' miRNA: 3'- -GCGGCGGCG----GCGG----GCGGCgcCCGCGA- -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 140302 | 0.66 | 0.401025 |
Target: 5'- cCGCgacaucCCGCCaCCCGCCGCaGGCGa- -3' miRNA: 3'- -GCGgc----GGCGGcGGGCGGCGcCCGCga -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 202300 | 0.66 | 0.401025 |
Target: 5'- gCGCCG-UGCCGCCgCGCUuuUGGGcCGCUc -3' miRNA: 3'- -GCGGCgGCGGCGG-GCGGc-GCCC-GCGA- -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 207162 | 0.66 | 0.400272 |
Target: 5'- aGCCGcCCGCgGUagcuguugaugugCCGCCG-GGGCGaCg -3' miRNA: 3'- gCGGC-GGCGgCG-------------GGCGGCgCCCGC-Ga -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 97757 | 0.66 | 0.393535 |
Target: 5'- -uCCGCCGCaa-CCGgCGCuaccGGGCGCUg -3' miRNA: 3'- gcGGCGGCGgcgGGCgGCG----CCCGCGA- -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 184364 | 1.05 | 0.000505 |
Target: 5'- uCGCCGCCGCCGCCCGCCGCGGGCGCUu -3' miRNA: 3'- -GCGGCGGCGGCGGGCGGCGCCCGCGA- -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 121963 | 0.66 | 0.408606 |
Target: 5'- aGCUGacCCGgguccCCGCCCGCCGgCGGGaCGa- -3' miRNA: 3'- gCGGC--GGC-----GGCGGGCGGC-GCCC-GCga -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 77365 | 0.66 | 0.408606 |
Target: 5'- aCGCCGUCGCCGagacCCCGaCCcCGGaaCGCUc -3' miRNA: 3'- -GCGGCGGCGGC----GGGC-GGcGCCc-GCGA- -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 219341 | 0.66 | 0.401025 |
Target: 5'- gGcCCGCCgGCUGCCCGgcguCCGCGaGGUccuGCg -3' miRNA: 3'- gC-GGCGG-CGGCGGGC----GGCGC-CCG---CGa -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 127840 | 0.66 | 0.401025 |
Target: 5'- uCGUCGgCGgCGUCCGCCGCGaa-GCUg -3' miRNA: 3'- -GCGGCgGCgGCGGGCGGCGCccgCGA- -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 145007 | 0.66 | 0.408606 |
Target: 5'- gGUCGagCGCuuCGCCCGCUacgccCGGGCGCg -3' miRNA: 3'- gCGGCg-GCG--GCGGGCGGc----GCCCGCGa -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 196243 | 0.66 | 0.393535 |
Target: 5'- uGuCCGCCG-CGCCCGCgCGCGccucucgccucGGCGa- -3' miRNA: 3'- gC-GGCGGCgGCGGGCG-GCGC-----------CCGCga -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 82117 | 0.66 | 0.393535 |
Target: 5'- aGCCGCgaGUCGggaCgGCCGCGcuGGCGCa -3' miRNA: 3'- gCGGCGg-CGGCg--GgCGGCGC--CCGCGa -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 113142 | 0.66 | 0.401025 |
Target: 5'- cCGCgCGCggggCGCCgGCCuCGCCGCGGccGgGCg -3' miRNA: 3'- -GCG-GCG----GCGG-CGG-GCGGCGCC--CgCGa -5' |
|||||||
8999 | 5' | -70.9 | NC_002512.2 | + | 101212 | 0.66 | 0.401025 |
Target: 5'- aCGaCgGCC-CCGUCCGCCGgGuuccGGCGCc -3' miRNA: 3'- -GC-GgCGGcGGCGGGCGGCgC----CCGCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home