miRNA display CGI


Results 1 - 20 of 520 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 5' -70.9 NC_002512.2 + 208654 0.66 0.408606
Target:  5'- cCGCCcCCGUC-UCCGCCcCGGGCGg- -3'
miRNA:   3'- -GCGGcGGCGGcGGGCGGcGCCCGCga -5'
8999 5' -70.9 NC_002512.2 + 196243 0.66 0.393535
Target:  5'- uGuCCGCCG-CGCCCGCgCGCGccucucgccucGGCGa- -3'
miRNA:   3'- gC-GGCGGCgGCGGGCG-GCGC-----------CCGCga -5'
8999 5' -70.9 NC_002512.2 + 82117 0.66 0.393535
Target:  5'- aGCCGCgaGUCGggaCgGCCGCGcuGGCGCa -3'
miRNA:   3'- gCGGCGg-CGGCg--GgCGGCGC--CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 184364 1.05 0.000505
Target:  5'- uCGCCGCCGCCGCCCGCCGCGGGCGCUu -3'
miRNA:   3'- -GCGGCGGCGGCGGGCGGCGCCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 121963 0.66 0.408606
Target:  5'- aGCUGacCCGgguccCCGCCCGCCGgCGGGaCGa- -3'
miRNA:   3'- gCGGC--GGC-----GGCGGGCGGC-GCCC-GCga -5'
8999 5' -70.9 NC_002512.2 + 145007 0.66 0.408606
Target:  5'- gGUCGagCGCuuCGCCCGCUacgccCGGGCGCg -3'
miRNA:   3'- gCGGCg-GCG--GCGGGCGGc----GCCCGCGa -5'
8999 5' -70.9 NC_002512.2 + 113142 0.66 0.401025
Target:  5'- cCGCgCGCggggCGCCgGCCuCGCCGCGGccGgGCg -3'
miRNA:   3'- -GCG-GCG----GCGG-CGG-GCGGCGCC--CgCGa -5'
8999 5' -70.9 NC_002512.2 + 202300 0.66 0.401025
Target:  5'- gCGCCG-UGCCGCCgCGCUuuUGGGcCGCUc -3'
miRNA:   3'- -GCGGCgGCGGCGG-GCGGc-GCCC-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 101212 0.66 0.401025
Target:  5'- aCGaCgGCC-CCGUCCGCCGgGuuccGGCGCc -3'
miRNA:   3'- -GC-GgCGGcGGCGGGCGGCgC----CCGCGa -5'
8999 5' -70.9 NC_002512.2 + 137876 0.66 0.393535
Target:  5'- aCGCCcgcgaguCCGCCGCCgGCgaCGCGGGagacccggaCGCg -3'
miRNA:   3'- -GCGGc------GGCGGCGGgCG--GCGCCC---------GCGa -5'
8999 5' -70.9 NC_002512.2 + 127840 0.66 0.401025
Target:  5'- uCGUCGgCGgCGUCCGCCGCGaa-GCUg -3'
miRNA:   3'- -GCGGCgGCgGCGGGCGGCGCccgCGA- -5'
8999 5' -70.9 NC_002512.2 + 128766 0.66 0.401025
Target:  5'- gCGCUGCgcgagCGCaCGCCgCGCCGC--GCGCUg -3'
miRNA:   3'- -GCGGCG-----GCG-GCGG-GCGGCGccCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 212998 0.66 0.408606
Target:  5'- uCGCCGCgGCCGUCgGgCC-CGGG-GCc -3'
miRNA:   3'- -GCGGCGgCGGCGGgC-GGcGCCCgCGa -5'
8999 5' -70.9 NC_002512.2 + 207162 0.66 0.400272
Target:  5'- aGCCGcCCGCgGUagcuguugaugugCCGCCG-GGGCGaCg -3'
miRNA:   3'- gCGGC-GGCGgCG-------------GGCGGCgCCCGC-Ga -5'
8999 5' -70.9 NC_002512.2 + 117552 0.66 0.408606
Target:  5'- aCGCUGCUGUacagCGCCaaggCGUCGauGGCGCUg -3'
miRNA:   3'- -GCGGCGGCG----GCGG----GCGGCgcCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 135842 0.66 0.401025
Target:  5'- cCGUCGUCGCCGaagagaUCCGCCGCGaaaccgaGCGUc -3'
miRNA:   3'- -GCGGCGGCGGC------GGGCGGCGCc------CGCGa -5'
8999 5' -70.9 NC_002512.2 + 110933 0.66 0.398769
Target:  5'- -cCCGCCGCCGCCCcacgcuccccucgaGCuCGCGGuCGa- -3'
miRNA:   3'- gcGGCGGCGGCGGG--------------CG-GCGCCcGCga -5'
8999 5' -70.9 NC_002512.2 + 97757 0.66 0.393535
Target:  5'- -uCCGCCGCaa-CCGgCGCuaccGGGCGCUg -3'
miRNA:   3'- gcGGCGGCGgcgGGCgGCG----CCCGCGA- -5'
8999 5' -70.9 NC_002512.2 + 77365 0.66 0.408606
Target:  5'- aCGCCGUCGCCGagacCCCGaCCcCGGaaCGCUc -3'
miRNA:   3'- -GCGGCGGCGGC----GGGC-GGcGCCc-GCGA- -5'
8999 5' -70.9 NC_002512.2 + 140302 0.66 0.401025
Target:  5'- cCGCgacaucCCGCCaCCCGCCGCaGGCGa- -3'
miRNA:   3'- -GCGgc----GGCGGcGGGCGGCGcCCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.