miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 53088 0.66 0.994309
Target:  5'- aGAGAcgCccaggACCCGUUCGcgggcgagcUGUCCCGAg -3'
miRNA:   3'- cCUCUa-Ga----UGGGCAAGCa--------GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 156179 0.66 0.994309
Target:  5'- gGGGGAgcguggCgauCCC--UgGUCGUCCCGAa -3'
miRNA:   3'- -CCUCUa-----Gau-GGGcaAgCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 100992 0.66 0.994309
Target:  5'- gGGcGGAUCgccagGCCCG-UC-UCGUCCCu- -3'
miRNA:   3'- -CC-UCUAGa----UGGGCaAGcAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 195212 0.66 0.993471
Target:  5'- cGAGAUCgugUCCGaugugUCGUCGcccgcgaugUCCCGAc -3'
miRNA:   3'- cCUCUAGau-GGGCa----AGCAGC---------AGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 213676 0.66 0.992536
Target:  5'- cGGAGGggaGCCCGg-CGUCG-CCCGc -3'
miRNA:   3'- -CCUCUagaUGGGCaaGCAGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 216855 0.66 0.992536
Target:  5'- cGuGAUCUcGCCC--UCGUCGUCCgCGu -3'
miRNA:   3'- cCuCUAGA-UGGGcaAGCAGCAGG-GCu -5'
9001 3' -53.6 NC_002512.2 + 82178 0.66 0.992536
Target:  5'- aGGAGgGUCgagaGCCCGUccgcCGUCGggccggcguccUCCCGGg -3'
miRNA:   3'- -CCUC-UAGa---UGGGCAa---GCAGC-----------AGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 64307 0.66 0.992536
Target:  5'- uGGGGAgcggCUGCCCGgccaccaCGUCgCCGAc -3'
miRNA:   3'- -CCUCUa---GAUGGGCaagca--GCAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 135117 0.66 0.992536
Target:  5'- uGGAGAaCUACCUcuccaagGUCGUCaCCGAc -3'
miRNA:   3'- -CCUCUaGAUGGGcaag---CAGCAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 33689 0.66 0.992536
Target:  5'- cGGAGGcUCgccagggACCCGgcCGUCGcCCCc- -3'
miRNA:   3'- -CCUCU-AGa------UGGGCaaGCAGCaGGGcu -5'
9001 3' -53.6 NC_002512.2 + 93106 0.66 0.992536
Target:  5'- uGGGcuUCUGCCUGUUCuUCGUgCUGGa -3'
miRNA:   3'- -CCUcuAGAUGGGCAAGcAGCAgGGCU- -5'
9001 3' -53.6 NC_002512.2 + 219277 0.66 0.992134
Target:  5'- aGGGGGcggacgccgacgcCgugGCCCGcUUCGUCGUCCgCGGc -3'
miRNA:   3'- -CCUCUa------------Ga--UGGGC-AAGCAGCAGG-GCU- -5'
9001 3' -53.6 NC_002512.2 + 204794 0.66 0.991498
Target:  5'- aGGAGAc--GCCCGggaGguccgCGUCCCGGg -3'
miRNA:   3'- -CCUCUagaUGGGCaagCa----GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 105933 0.66 0.991498
Target:  5'- cGGGGAggcggACUCGUUCGUCacgGUCgCGGa -3'
miRNA:   3'- -CCUCUaga--UGGGCAAGCAG---CAGgGCU- -5'
9001 3' -53.6 NC_002512.2 + 106330 0.66 0.991498
Target:  5'- cGGcGGcUCUcCCCGgUCGcUCGUCCCGc -3'
miRNA:   3'- -CC-UCuAGAuGGGCaAGC-AGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 7012 0.66 0.991498
Target:  5'- aGGAGAgccgcagggcCUugCCGggcUCGUCGUUCgGGa -3'
miRNA:   3'- -CCUCUa---------GAugGGCa--AGCAGCAGGgCU- -5'
9001 3' -53.6 NC_002512.2 + 217784 0.66 0.990348
Target:  5'- cGGGGUCgcgGCCggcuggcggauCGgcgUCGcCGUCCCGAu -3'
miRNA:   3'- cCUCUAGa--UGG-----------GCa--AGCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 223205 0.66 0.990348
Target:  5'- cGGGGA-CggcguCCCGgagCG-CGUCCCGGc -3'
miRNA:   3'- -CCUCUaGau---GGGCaa-GCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 76759 0.66 0.990348
Target:  5'- -cGGAUC-GCCCGUcccgcccgUCGccaccgaaUCGUCCCGGa -3'
miRNA:   3'- ccUCUAGaUGGGCA--------AGC--------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 219656 0.66 0.989856
Target:  5'- cGGAGGUUcGCCCGUcgggaucugggcgCGcCG-CCCGAg -3'
miRNA:   3'- -CCUCUAGaUGGGCAa------------GCaGCaGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.