miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 225841 0.69 0.966445
Target:  5'- gGGGGAUCgagccgcuccuguCCCGggUGUCGUCucuCCGAc -3'
miRNA:   3'- -CCUCUAGau-----------GGGCaaGCAGCAG---GGCU- -5'
9001 3' -53.6 NC_002512.2 + 223205 0.66 0.990348
Target:  5'- cGGGGA-CggcguCCCGgagCG-CGUCCCGGc -3'
miRNA:   3'- -CCUCUaGau---GGGCaa-GCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 223115 0.69 0.958494
Target:  5'- gGGGGAUCcGCgggucgaguCCGUcaUCGUCuUCCCGAu -3'
miRNA:   3'- -CCUCUAGaUG---------GGCA--AGCAGcAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 220795 0.79 0.543132
Target:  5'- uGGGGAUCguccucgACCCGcUCGUgGUCCCGc -3'
miRNA:   3'- -CCUCUAGa------UGGGCaAGCAgCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 219656 0.66 0.989856
Target:  5'- cGGAGGUUcGCCCGUcgggaucugggcgCGcCG-CCCGAg -3'
miRNA:   3'- -CCUCUAGaUGGGCAa------------GCaGCaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 219277 0.66 0.992134
Target:  5'- aGGGGGcggacgccgacgcCgugGCCCGcUUCGUCGUCCgCGGc -3'
miRNA:   3'- -CCUCUa------------Ga--UGGGC-AAGCAGCAGG-GCU- -5'
9001 3' -53.6 NC_002512.2 + 218591 0.69 0.958494
Target:  5'- cGGAGGUCUcCCCGgggUC-UCG-CCCGc -3'
miRNA:   3'- -CCUCUAGAuGGGCa--AGcAGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 217784 0.66 0.990348
Target:  5'- cGGGGUCgcgGCCggcuggcggauCGgcgUCGcCGUCCCGAu -3'
miRNA:   3'- cCUCUAGa--UGG-----------GCa--AGCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 216855 0.66 0.992536
Target:  5'- cGuGAUCUcGCCC--UCGUCGUCCgCGu -3'
miRNA:   3'- cCuCUAGA-UGGGcaAGCAGCAGG-GCu -5'
9001 3' -53.6 NC_002512.2 + 215706 0.72 0.887154
Target:  5'- cGGGGAccgcaucccgcUCUGCCCGcacgUCGagaccuUCGUCCCGc -3'
miRNA:   3'- -CCUCU-----------AGAUGGGCa---AGC------AGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 213676 0.66 0.992536
Target:  5'- cGGAGGggaGCCCGg-CGUCG-CCCGc -3'
miRNA:   3'- -CCUCUagaUGGGCaaGCAGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 212978 0.67 0.983962
Target:  5'- cGAGAUCUgcgaccucaucgucGCCgCGgcCGUCGggCCCGGg -3'
miRNA:   3'- cCUCUAGA--------------UGG-GCaaGCAGCa-GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 210574 0.68 0.968252
Target:  5'- uGGAGAugacguggUCgACCCGUUCGUCcggagGUCCUc- -3'
miRNA:   3'- -CCUCU--------AGaUGGGCAAGCAG-----CAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 210447 0.71 0.893684
Target:  5'- cGGGGA-CUggACCCGUggaugCGUCCCGAu -3'
miRNA:   3'- -CCUCUaGA--UGGGCAagca-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 209357 0.68 0.973774
Target:  5'- cGAGGUCggcgACCUGgcgacCGUgUGUCCCGAc -3'
miRNA:   3'- cCUCUAGa---UGGGCaa---GCA-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 208605 0.66 0.989081
Target:  5'- cGAGGUCgagguUCCGUgcuGUCGUCCCc- -3'
miRNA:   3'- cCUCUAGau---GGGCAag-CAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 204794 0.66 0.991498
Target:  5'- aGGAGAc--GCCCGggaGguccgCGUCCCGGg -3'
miRNA:   3'- -CCUCUagaUGGGCaagCa----GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 195212 0.66 0.993471
Target:  5'- cGAGAUCgugUCCGaugugUCGUCGcccgcgaugUCCCGAc -3'
miRNA:   3'- cCUCUAGau-GGGCa----AGCAGC---------AGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 193678 0.69 0.950951
Target:  5'- aGGAGggCU-CCCGca-GUCGgUCCCGGg -3'
miRNA:   3'- -CCUCuaGAuGGGCaagCAGC-AGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 190664 0.75 0.718922
Target:  5'- --cGAUCUGCCCGUUCacucuccGUUGUCuCCGAu -3'
miRNA:   3'- ccuCUAGAUGGGCAAG-------CAGCAG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.